CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3681 contig Csv1_Contig3681:23..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.208e-34
Identity = 67/141 (47.52%), Postives = 96/141 (68.09%), Query Frame = -1
Query:  353 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 775
            +DF+ + +D DG  +KLQ+WDTAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GNK D    +VV  E  +  A E G+PFMETSAK+  NV+ AF A+A  +K R    P+    R
Sbjct:   99 IDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQRSMKAPSEPRFR 239          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.766e-34
Identity = 69/131 (52.67%), Postives = 96/131 (73.28%), Query Frame = -1
Query:  383 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 775
            V+F  R ++ D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +LVGNKCDL+  + VSYE  + FA E G+ FME SAK+A NVE+AF+  A +I  ++
Sbjct:   41 VEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.919e-34
Identity = 77/176 (43.75%), Postives = 106/176 (60.23%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM-----------------ASQPASNNARPPTVQIRGQPVNQKSGCC 775
            V+F  R V+ DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK+A NVE+AF+  A  I  ++                   Q  S +  P   Q   + +   SGCC
Sbjct:   41 VEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSISTSVGPSASQRNSRDIGSNSGCC 216          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.425e-34
Identity = 65/136 (47.79%), Postives = 96/136 (70.59%), Query Frame = -1
Query:  368 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPA 775
            +DF+ + VD DG  +KLQIWDTAGQERFR++T +YYR AH ++++YDVT++ SF++++ WL EI  +A ++V  +L+GNK D    + V  E A+  A + G+PFMETSAK+  NV+ AF A+A  +K R    P+
Sbjct:   99 IDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKELKQRHTKAPS 234          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.391e-34
Identity = 74/164 (45.12%), Postives = 101/164 (61.59%), Query Frame = -1
Query:  302 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM------ASQPASNNARPPTVQIRGQPVNQKSGC 775
            +DFK++TV +  K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL   +VV  E  +  AD++G  F E SAK   NV+Q F  +   I ++M      +S P SN   P    +   P  Q S C
Sbjct:   57 IDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP---ALGDTPPPQPSSC 217          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.391e-34
Identity = 72/163 (44.17%), Postives = 105/163 (64.42%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGCC 775
            +DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+   +V+S E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T      P  Q +  C
Sbjct:   65 IDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC 227          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.096e-33
Identity = 75/173 (43.35%), Postives = 106/173 (61.27%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP--------------ASNNARPPTVQIRGQPVNQKSGCC 775
            V+F  R ++ DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNKCDLT  + V+ E  + FA E G+ F+ETSA++A NVE+AF+  A  I  ++                     NA P TV+       + S CC
Sbjct:   41 VEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVKPGEGGAAKSSSCC 213          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.096e-33
Identity = 70/157 (44.59%), Postives = 106/157 (67.52%), Query Frame = -1
Query:  305 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSG 775
            V+F  R +  D K IKLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +++FN++  WL +   YA+ N+  +L+GNK D+ + + VSYE  + FADE G+ F+ETSAK+A+NVE+AF+  A+ I  ++       N     +++ G P +++ G
Sbjct:   40 VEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINNESFGIKL-GAPTSKQDG 195          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.431e-33
Identity = 71/162 (43.83%), Postives = 107/162 (66.05%), Query Frame = -1
Query:  302 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGC 775
            +DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+   +V+S E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T +++  P   +  C
Sbjct:   65 IDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNT-RLKETPPPPQPNC 225          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.869e-33
Identity = 74/164 (45.12%), Postives = 101/164 (61.59%), Query Frame = -1
Query:  302 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM------ASQPASNNARPPTVQIRGQPVNQKSGC 775
            +DFK++TV +  K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL   +VVS E  +  A ++G  F E SAK   NV+Q F  +   I ++M      +S P SN   P    +   P  Q S C
Sbjct:   57 IDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP---ALGDTPPPQPSSC 217          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB26_HUMAN2.208e-3447.52Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RAB2A_MAIZE3.766e-3452.67Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB2B_HUMAN4.919e-3443.75Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB26_BOVIN6.425e-3447.79Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RAB3D_MOUSE8.391e-3445.12Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3C_HUMAN8.391e-3444.17Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
YPTC4_CHLRE1.096e-3343.35GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2A_DICDI1.096e-3344.59Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB3C_BOVIN1.431e-3343.83Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB3D_RAT1.869e-3345.12GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
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