CN185838

Overview
NameCN185838
Unique NameCN185838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7065 contig Csv1_Contig7065:34..575. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.626e-41
Identity = 82/129 (63.57%), Postives = 100/129 (77.52%), Query Frame = 3
Query:   75 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQK 461
            +VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF F+T FGGGK+TGF ++YDS+D AKK EPKYRL R+GL  K + SRKQ KERKNR KK+RG KK     A +K
Sbjct:    4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKKVRGTKKASVGAAGKK 131          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.042e-41
Identity = 85/128 (66.41%), Postives = 98/128 (76.56%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQK 461
            VTIRTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K       +K
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKK 131          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.031e-40
Identity = 85/129 (65.89%), Postives = 101/129 (78.29%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQKK 464
            VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG K  KAS  A KK
Sbjct:    5 VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKKVRGTK--KASVGASKK 130          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.539e-39
Identity = 77/118 (65.25%), Postives = 97/118 (82.20%), Query Frame = 3
Query:   63 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKK 416
            M   AV +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V DP +IF+F F+T FGGGKSTGFGLIYD+++ AKK+EPKYRL R GL TK + SRKQ KE+KNR KK
Sbjct:    1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKK 118          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.330e-39
Identity = 79/125 (63.20%), Postives = 97/125 (77.60%), Query Frame = 3
Query:   66 ADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 440
            AD AVTIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY   D   + VF F+THFGGGK+TGF LIYD+V++ K FEPK+RL+R GL    +  RKQ KE+KNR KK RGV+K+K
Sbjct:   20 ADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLAEAPKGGRKQRKEKKNREKKFRGVRKSK 143          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.386e-39
Identity = 79/128 (61.72%), Postives = 97/128 (75.78%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQK 461
            VTIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL  +GL  K + SRKQ  ER+NR KK+R +KK     A +K
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKKVRSIKKASVGAAGKK 131          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 3.103e-37
Identity = 82/130 (63.08%), Postives = 100/130 (76.92%), Query Frame = 3
Query:   75 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRGVKKTKASDAAQK 461
            AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +++ VF FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR KKI G  K  A   A++
Sbjct:    4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR 132          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 9.029e-37
Identity = 77/132 (58.33%), Postives = 99/132 (75.00%), Query Frame = 3
Query:   72 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRGVKKTKASDAAQKK 464
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY   D   +  F  RTHFGGG+STGF LIYDS +S KKFEP YRL+R G    ++K +R+Q K+RKNR KK+ G  K  A   ++++
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGTGKRLAKRKSKQQ 133          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.304e-35
Identity = 73/132 (55.30%), Postives = 100/132 (75.76%), Query Frame = 3
Query:   72 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRGVKKTKASDAAQKK 464
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY   D +++  F  RTH+GGG++TGF LIYD V++ KKFEP YRL+R G    ++K +R+Q K+RKNR KK+ G  K  A   ++++
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGTGKRLAKRKSKQQ 133          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_PYRKO (30S ribosomal protein S24e OS=Pyrococcus kodakaraensis GN=rps24e PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 3
Query:   84 IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK 374
            I+  +   N+LL RK+   DVLH G    S+  +K KL  M D+ DPN+  +   R++FG   S G+   Y++ +     EP+Y L+R+GL  K E+
Sbjct:    3 IKVTEIRENKLLGRKEIYFDVLHEGEPTPSREAVKGKLVAMLDL-DPNTTVIQYIRSYFGSNVSKGYAKAYETRERMLYIEPEYILVRDGLVQKQEE 98          
The following BLAST results are available for this feature:
BLAST of CN185838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RS24_ICTPU4.626e-4163.5740S ribosomal protein S24 OS=Ictalurus punctatus G... [more]
RS24_MACFA6.042e-4166.4140S ribosomal protein S24 OS=Macaca fascicularis G... [more]
RS24_TAKRU1.031e-4065.8940S ribosomal protein S24 OS=Takifugu rubripes GN=... [more]
RS24_DICDI2.539e-3965.2540S ribosomal protein S24 OS=Dictyostelium discoid... [more]
RS24_RHIRA4.330e-3963.2040S ribosomal protein S24 OS=Rhizomucor racemosus ... [more]
RS24_ORYLA7.386e-3961.7240S ribosomal protein S24 OS=Oryzias latipes GN=rp... [more]
RS24_YEAST3.103e-3763.0840S ribosomal protein S24 OS=Saccharomyces cerevis... [more]
RS24B_SCHPO9.029e-3758.3340S ribosomal protein S24-B OS=Schizosaccharomyces... [more]
RS24A_SCHPO1.304e-3555.3040S ribosomal protein S24-A OS=Schizosaccharomyces... [more]
RS24_PYRKO8.510e-1136.0830S ribosomal protein S24e OS=Pyrococcus kodakarae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185838 ID=CN185838; Name=CN185838; organism=Citrus sinensis; type=EST; length=542bp
ATTGTCGCGCCTCTCGTGCTATATCTTTGTCGAGGATTCCTCAGACTTTT
AACCAACCAACAATGGCGGACAAGGCTGTCACCATTCGAACTAGGAAGTT
CATGACCAACCGTCTCCTTTCCAGGAAGCAATTCGTTATTGATGTTCTTC
ATCCTGGCAGGGCCAATGTTTCCAAGGCTGAGTTGAAGGAGAAGTTGGCA
AGGATGTATGATGTGAAGGACCCCAACTCAATCTTTGTTTTTAAGTTCCG
AACTCACTTTGGAGGTGGGAAATCTACCGGCTTTGGTCTGATCTATGATT
CAGTTGACAGTGCTAAGAAGTTTGAGCCCAAGTACAGGCTTATCAGGAAT
GGACTTGATACCAAGGTAGAGAAGTCAAGGAAGCAGATGAAGGAAAGGAA
GAACAGGGCTAAGAAGATCCGTGGTGTAAAGAAGACCAAGGCCTCAGATG
CTGCCCAGAAGAAGTGAGCAATTGGAGATTCTTCTGTAGTCTCGAAGCCA
ATTTTCTGTGATGGAGTTTCTATAATAGTCTTTTTTTTTTTT
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