DC900050

Overview
NameDC900050
Unique NameDC900050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900050_ssr53 microsatellite DC900050_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5903 contig Csv1_Contig5903:587..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_SCHPO (Eukaryotic translation initiation factor 3 subunit G OS=Schizosaccharomyces pombe GN=tif35 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.147e-23
Identity = 53/109 (48.62%), Postives = 81/109 (74.31%), Query Frame = 2
Query:   74 KGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            KG Y+ P +RAG+ R   D    R R+D  ++RVTNLS+DTRE +L +LFR FG + RVY+A D++TG ++GF FV++ +++ A +A ++L+GYG++NLILR E++ PR
Sbjct:  173 KGRYIAPHLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSKPR 281          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_CHAGB (Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium globosum GN=TIF35 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.657e-22
Identity = 51/108 (47.22%), Postives = 79/108 (73.15%), Query Frame = 2
Query:   74 KGTYVPPGMRAGA-----ERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 382
            KG+YVPP MRAGA     ER G     R+D  ++RVTN+SE   E +L ++F  FG V+RV++A D+ TG+++GF F+++ +++DA +A NK++G+G+ +LILRVE+A
Sbjct:  192 KGSYVPPAMRAGAGGAQGERMGGKYGERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGMAKGFAFISYADRDDAVKACNKMDGFGFRHLILRVEFA 299          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G1_DROAN (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila ananassae GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.657e-22
Identity = 49/107 (45.79%), Postives = 72/107 (67.29%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 397
            G YVPP ++    + G  MR R+D  ++R++NLSE   E DL EL +  G  S++Y+A D+ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+ N
Sbjct:  164 GKYVPPFLKDSVGKVGMGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQNN 270          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G1_DROWI (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila willistoni GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.402e-21
Identity = 49/107 (45.79%), Postives = 74/107 (69.16%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 397
            G YVPP ++  +++ G  MR R+D  ++R++NLSE   E DL EL +  G  S++Y+A D+ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+ N
Sbjct:  164 GKYVPPFLK-DSQKGGMGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQNN 269          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G1_DROVI (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila virilis GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.402e-21
Identity = 49/107 (45.79%), Postives = 74/107 (69.16%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 397
            G YVPP ++  +++ G  MR R+D  ++R++NLSE   E DL EL +  G  S++Y+A D+ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+ N
Sbjct:  164 GKYVPPFLK-DSQKGGMGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQNN 269          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G1_DROPS (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.402e-21
Identity = 49/107 (45.79%), Postives = 74/107 (69.16%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 397
            G YVPP ++  +++ G  MR R+D  ++R++NLSE   E DL EL +  G  S++Y+A D+ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+ N
Sbjct:  164 GKYVPPFLK-DSQKGGLGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQNN 269          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G1_DROPE (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila persimilis GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.402e-21
Identity = 49/107 (45.79%), Postives = 74/107 (69.16%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 397
            G YVPP ++  +++ G  MR R+D  ++R++NLSE   E DL EL +  G  S++Y+A D+ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+ N
Sbjct:  164 GKYVPPFLK-DSQKGGLGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQNN 269          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G1_DROMO (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila mojavensis GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.402e-21
Identity = 49/107 (45.79%), Postives = 74/107 (69.16%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 397
            G YVPP ++  +++ G  MR R+D  ++R++NLSE   E DL EL +  G  S++Y+A D+ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+ N
Sbjct:  164 GKYVPPFLK-DSQKGGMGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQNN 269          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G2_DROAN (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila ananassae GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.124e-21
Identity = 49/105 (46.67%), Postives = 72/105 (68.57%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP M+ GA   G   R R+D ++VR++NLSE   E DL EL +  G  +++Y+A ++ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  164 GKYVPPFMKDGAGGAGGKGRERDDSSAVRISNLSESMTETDLEELVKKIGPHTKMYLAREKNTGLCKGFAYVHFKFRQDAAAAIEILNGHGYDHLILCVEWSKPQ 268          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_SCLS1 (Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.081e-21
Identity = 50/111 (45.05%), Postives = 76/111 (68.47%), Query Frame = 2
Query:   74 KGTYVPPGMR----AGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 394
            K +YVPP +R    AG ER G     R+D  ++RVTN+SE   E +L ++F  FG V+RV++A D++TG+++GF F++F  + DA +A  K++GYG+ +LILRVE+A   T
Sbjct:  178 KSSYVPPHLRNGGAAGGERMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFQERSDAAKACEKMDGYGFKHLILRVEFAKKAT 288          
The following BLAST results are available for this feature:
BLAST of DC900050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
EIF3G_SCHPO1.147e-2348.62Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_CHAGB1.657e-2247.22Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROAN1.657e-2245.79Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROWI1.402e-2145.79Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROVI1.402e-2145.79Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROPS1.402e-2145.79Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROPE1.402e-2145.79Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROMO1.402e-2145.79Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROAN3.124e-2146.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_SCLS14.081e-2145.05Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionDC900050 VSS Citrus sinensis cDNA clone VS27Q56 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900050 ID=DC900050; Name=DC900050; organism=Citrus sinensis; type=EST; length=611bp
TGCTGCTCCAGCTGAGACATTCATTGATAAACCAGCTGCATCAGAGACTG
CAGCTGCTGCTGCTGGCGCGACCAAGGGAACATATGTTCCTCCTGGCATG
AGAGCAGGGGCGGAGAGAACTGGAACTGATATGAGACGCAGGAATGATGA
GAACTCTGTTAGGGTCACCAACCTATCGGAGGACACTCGGGAACCTGACT
TGCTTGAGCTCTTCCGGCCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCT
GTTGATCAGAAGACTGGCATAAGCAGAGGTTTTGGTTTTGTGAACTTTGT
GAACAAGGAAGATGCTCAGAGAGCTATCAACAAACTGAATGGCTATGGTT
ATGACAATCTCATCCTCAGAGTTGAATGGGCCACTCCAAGGACTAACTAG
ATCGATCTATTTATCCTTGAGCTTTAACGGGATACAATATCAATTTTGTG
TATTATTTTATACTATCTTAAGTATTGAATGATCTTGGAGTGTTTTGTTG
AGAGACTATGGCTTTCCTACAAGTACTTTGTACTCGAGATGATTTAATTT
ATGCCGTAGGTTCAATGTTTTTCAATGTTATTTGATNTCTAATAAGATAC
CAGGCAACACT
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