DC900050

Overview
NameDC900050
Unique NameDC900050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900050_ssr53 microsatellite DC900050_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5903 contig Csv1_Contig5903:587..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G2_DROSI (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila simulans GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP M+ G   +G+      R R+D ++VR++NLSE   E DL EL +  G  +++Y+A ++ +G+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  164 GKYVPPFMKDGGGISGSKNWGRGRDRDDSSAVRISNLSESMTETDLEELVKKIGPHTKMYLAREKNSGLCKGFAYVHFKFRQDAAAAIEVLNGHGYDHLILCVEWSKPQ 272          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G2_DROSE (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila sechellia GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP M+ G   +G+      R R+D ++VR++NLSE   E DL EL +  G  +++Y+A ++ +G+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  164 GKYVPPFMKDGGGISGSKNWGRGRDRDDSSAVRISNLSESMTETDLEELVKKIGPHTKMYLAREKNSGLCKGFAYVHFKFRQDAAAAIEVLNGHGYDHLILCVEWSKPQ 272          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G2_DROMO (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila mojavensis GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 45/105 (42.86%), Postives = 71/105 (67.62%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP ++ G +      R R+D ++VR++NLSE   E DL EL +  G  +++Y+A ++ +G+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  159 GKYVPPFLKEGGKG-----RERDDSSAVRISNLSESMTEDDLEELVKKIGPHTKMYLAREKNSGLCKGFAYVHFKYRKDAAEAIEILNGHGYDHLILSVEWSKPQ 258          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G2_DROME (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila melanogaster GN=eIF3-S4-2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP M+ G   +G+      R R+D ++VR++NLSE   E DL EL +  G  +++Y+A ++ +G+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  164 GKYVPPFMKDGGGISGSKNWGRGRDRDDSSAVRISNLSESMTETDLEELVKKIGPHTKMYLAREKNSGLCKGFAYVHFKFRQDAAAAIEVLNGHGYDHLILCVEWSKPQ 272          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G2_DROGR (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila grimshawi GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 45/105 (42.86%), Postives = 71/105 (67.62%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP ++ GA+      R R+D  +VR++NLSE   E DL EL +  G  +++Y+A ++ +G+ +GF +V+F  ++DA  A+  LNG+GYD+LIL VEW+ P+
Sbjct:  160 GKYVPPFLKDGAKG-----RERDDSCAVRISNLSESMTEDDLEELVKKIGPFTKMYLAREKTSGLCKGFAYVHFKYRKDAAEAVEVLNGHGYDHLILSVEWSKPQ 259          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_BRUMA (Eukaryotic translation initiation factor 3 subunit G OS=Brugia malayi GN=Bm1_08615 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEW 379
            G YV PGMR           RR++EN+ RVTNL E+  E +L  LF   G V+RV++A D+ T   +GF FV F ++   + AI KLNGY  D+L+L+VEW
Sbjct:  183 GKYVAPGMRGDRPAVTGGAERRSEENTCRVTNLPEECDEMELRALFGTVGTVNRVFIAKDKHTNKPKGFAFVTFEHRSQTEAAIQKLNGYKLDHLVLKVEW 283          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPCL (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus clavatus GN=tif35 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.111e-18
Identity = 48/108 (44.44%), Postives = 73/108 (67.59%), Query Frame = 2
Query:   80 TYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 394
            +YVPP MR GA   G  M     ++D  ++RVTN+SE   E ++ +LF  FG V+RV++A D++T  ++GF F++F ++ DA RA  K++G+GY +LILRVE+A   T
Sbjct:  183 SYVPPHMRKGAASGGERMAGKYEKDDLATLRVTNVSELAEESEIRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDAARACEKMDGFGYRHLILRVEFAKRAT 290          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_NEOFI (Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=TIF35 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.895e-18
Identity = 48/108 (44.44%), Postives = 73/108 (67.59%), Query Frame = 2
Query:   80 TYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 394
            +YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D++T  ++GF F++F ++ DA RA  K++G+GY +LILRVE+A   T
Sbjct:  183 SYVPPHLRKGAAAGGERMAGKYEKDDLATLRVTNVSELAEESELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRTDAARACEKMDGFGYRHLILRVEFAKRAT 290          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPFU (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus fumigatus GN=tif35 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.895e-18
Identity = 48/108 (44.44%), Postives = 73/108 (67.59%), Query Frame = 2
Query:   80 TYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 394
            +YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D++T  ++GF F++F ++ DA RA  K++G+GY +LILRVE+A   T
Sbjct:  183 SYVPPHLRKGAAAGGERMAGKYEKDDLATLRVTNVSELAEESELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRTDAARACEKMDGFGYRHLILRVEFAKRAT 290          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPFC (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=tif35 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.895e-18
Identity = 48/108 (44.44%), Postives = 73/108 (67.59%), Query Frame = 2
Query:   80 TYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 394
            +YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D++T  ++GF F++F ++ DA RA  K++G+GY +LILRVE+A   T
Sbjct:  183 SYVPPHLRKGAAAGGERMAGKYEKDDLATLRVTNVSELAEESELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRTDAARACEKMDGFGYRHLILRVEFAKRAT 290          
The following BLAST results are available for this feature:
BLAST of DC900050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
EI3G2_DROSI6.515e-1943.12Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROSE6.515e-1943.12Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROMO6.515e-1942.86Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROME6.515e-1943.12Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROGR6.515e-1942.86Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_BRUMA8.508e-1945.54Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPCL1.111e-1844.44Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_NEOFI1.895e-1844.44Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPFU1.895e-1844.44Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPFC1.895e-1844.44Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionDC900050 VSS Citrus sinensis cDNA clone VS27Q56 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900050 ID=DC900050; Name=DC900050; organism=Citrus sinensis; type=EST; length=611bp
TGCTGCTCCAGCTGAGACATTCATTGATAAACCAGCTGCATCAGAGACTG
CAGCTGCTGCTGCTGGCGCGACCAAGGGAACATATGTTCCTCCTGGCATG
AGAGCAGGGGCGGAGAGAACTGGAACTGATATGAGACGCAGGAATGATGA
GAACTCTGTTAGGGTCACCAACCTATCGGAGGACACTCGGGAACCTGACT
TGCTTGAGCTCTTCCGGCCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCT
GTTGATCAGAAGACTGGCATAAGCAGAGGTTTTGGTTTTGTGAACTTTGT
GAACAAGGAAGATGCTCAGAGAGCTATCAACAAACTGAATGGCTATGGTT
ATGACAATCTCATCCTCAGAGTTGAATGGGCCACTCCAAGGACTAACTAG
ATCGATCTATTTATCCTTGAGCTTTAACGGGATACAATATCAATTTTGTG
TATTATTTTATACTATCTTAAGTATTGAATGATCTTGGAGTGTTTTGTTG
AGAGACTATGGCTTTCCTACAAGTACTTTGTACTCGAGATGATTTAATTT
ATGCCGTAGGTTCAATGTTTTTCAATGTTATTTGATNTCTAATAAGATAC
CAGGCAACACT
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