DC900050

Overview
NameDC900050
Unique NameDC900050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900050_ssr53 microsatellite DC900050_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5903 contig Csv1_Contig5903:587..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPNC (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif35 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 48/108 (44.44%), Postives = 73/108 (67.59%), Query Frame = 2
Query:   80 TYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 394
            +YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D++T  ++GF F++F ++ DA RA  K++G+GY +LILRVE+A   T
Sbjct:  181 SYVPPHLRKGAAGGGERMAGKYEKDDLATLRVTNVSELAEEGELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDAARACEKMDGFGYRHLILRVEFAKRAT 288          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_PHANO (Eukaryotic translation initiation factor 3 subunit G OS=Phaeosphaeria nodorum GN=TIF35 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.203e-18
Identity = 46/104 (44.23%), Postives = 72/104 (69.23%), Query Frame = 2
Query:   77 GTYVPPGMR--AGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWA 382
            G YVPP +R  AGA         R+D  ++RVTN+SE   E DL ++F  +G V+RV++A D++TG ++GF FV++ ++ DA +A  K++G+G+ +LILRVE+A
Sbjct:  175 GGYVPPHLRGRAGAGEKMGGKFDRDDSATLRVTNVSEFAEEQDLRDMFSRYGHVTRVFLAKDRETGRAKGFAFVSYADRTDAAKACEKMDGFGFGHLILRVEFA 278          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_COCIM (Eukaryotic translation initiation factor 3 subunit G OS=Coccidioides immitis GN=TIF35 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.737e-17
Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = 2
Query:   83 YVPPGMRAGAERTGTDMRRRNDEN---SVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRT 394
            YVPP +R G    G  M  R + +   ++RVTN+SE   E +L ++F  FG V+RV++A D++T +++GF F++F ++ DA RA  K++G+GY +LILRVE+A   T
Sbjct:  183 YVPPALRKGGSG-GEKMAGRYERDELATLRVTNVSELAEEGELRDMFGRFGHVTRVFLAKDKETNMAKGFAFISFADRADAARACEKMDGFGYRHLILRVEFAKKTT 288          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_YARLI (Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia lipolytica GN=TIF35 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.964e-17
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 2
Query:   77 GTYVPPGMR-------AGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP +R        G           +DE ++RVTNLSE+  + DL  +F  +G ++RVYVA D+ TG  RGF FV +  K  AQ A+  ++G+G+DNLI++V+++  R
Sbjct:  182 GGYVPPHLRNKGPGGPGGPGGAAGGRSDDDDELTLRVTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTLKSHAQAALEAMDGHGFDNLIMKVDYSKKR 293          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_VANPO (Eukaryotic translation initiation factor 3 subunit G OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF35 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.964e-17
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLE-LFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP  RAGA+   +D     R R+D  ++++T L+E+  E  L E L  PFG + RV V  +++TG SRG  FV F ++E A++A   LNG G+ NLIL+V+W+ P+
Sbjct:  162 GKYVPPSRRAGAKDPSSDAYRDSRERDDMATLKITQLNENADETTLREELLFPFGNIPRVVVVRNRETGRSRGLAFVTFSSEEVAEKARRLLNGRGFMNLILQVDWSKPK 271          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_CANGA (Eukaryotic translation initiation factor 3 subunit G OS=Candida glabrata GN=TIF35 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.317e-16
Identity = 45/110 (40.91%), Postives = 70/110 (63.64%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLL-ELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP  RAGA    +D     R R+D  ++++  L+E+  E  L  EL  PF  + +V V  +++TG SRG  FV F+N++ A++A++ L+G G+ NLILRV+W+ P+
Sbjct:  160 GAYVPPSRRAGARDPSSDAYRDARERDDSCTLKILQLNENADENTLRNELLFPFEPIQKVVVVRNKETGRSRGLAFVTFINEDMAEKALHFLDGRGFMNLILRVDWSKPK 269          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EI3G2_DROPS (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.317e-16
Identity = 43/108 (39.81%), Postives = 69/108 (63.89%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDMRRR---NDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YV P ++ G    G  +  +    + ++VR++NLSE   E DL EL +  G  +++Y+A ++ TG+ +GF +V+F  ++DA  AI  LNG+GYD+LIL VEW+ P+
Sbjct:  166 GKYVSPFLKEGGCAIGGGIGAKPWVRERSAVRISNLSESMTEADLEELVKKIGPHTKLYLAREKNTGLCKGFAYVHFKFRQDAAAAIEILNGHGYDHLILCVEWSKPQ 273          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_BOMMO (Eukaryotic translation initiation factor 3 subunit G OS=Bombyx mori GN=eIF3-S4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.026e-16
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 2
Query:   83 YVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPRTN 397
            Y+PP               R D  ++R++NLS    E D+ +L + FG V ++Y+A ++ TG  +GF +V+F  + DA +AI  LNG+GYD+LIL VEW+ P  N
Sbjct:  169 YIPPSSAGRIPGRDQPPVSREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQN 273          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_YEAST (Eukaryotic translation initiation factor 3 subunit G OS=Saccharomyces cerevisiae GN=TIF35 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.742e-16
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLE-LFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP  RAGA    +D     R R+D  ++++  ++E+  E  L E L  PF  + RV V  +++TG SRG  FV F ++E A++A+  L+G GY NLILRVEW+ P+
Sbjct:  162 GQYVPPSRRAGARDPSSDAYRDSRERDDMCTLKIMQVNENADENSLREELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPK 271          
BLAST of DC900050 vs. ExPASy Swiss-Prot
Match: EIF3G_YEAS7 (Eukaryotic translation initiation factor 3 subunit G OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF35 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.742e-16
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 2
Query:   77 GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLE-LFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNKEDAQRAINKLNGYGYDNLILRVEWATPR 391
            G YVPP  RAGA    +D     R R+D  ++++  ++E+  E  L E L  PF  + RV V  +++TG SRG  FV F ++E A++A+  L+G GY NLILRVEW+ P+
Sbjct:  162 GQYVPPSRRAGARDPSSDAYRDSRERDDMCTLKIMQVNENADENSLREELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPK 271          
The following BLAST results are available for this feature:
BLAST of DC900050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
EIF3G_ASPNC2.476e-1844.44Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_PHANO7.203e-1844.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_COCIM2.737e-1742.99Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_YARLI7.964e-1740.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_VANPO7.964e-1743.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_CANGA2.317e-1640.91Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROPS2.317e-1639.81Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_BOMMO3.026e-1639.05Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_YEAST6.742e-1642.73Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_YEAS76.742e-1642.73Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionDC900050 VSS Citrus sinensis cDNA clone VS27Q56 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900050 ID=DC900050; Name=DC900050; organism=Citrus sinensis; type=EST; length=611bp
TGCTGCTCCAGCTGAGACATTCATTGATAAACCAGCTGCATCAGAGACTG
CAGCTGCTGCTGCTGGCGCGACCAAGGGAACATATGTTCCTCCTGGCATG
AGAGCAGGGGCGGAGAGAACTGGAACTGATATGAGACGCAGGAATGATGA
GAACTCTGTTAGGGTCACCAACCTATCGGAGGACACTCGGGAACCTGACT
TGCTTGAGCTCTTCCGGCCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCT
GTTGATCAGAAGACTGGCATAAGCAGAGGTTTTGGTTTTGTGAACTTTGT
GAACAAGGAAGATGCTCAGAGAGCTATCAACAAACTGAATGGCTATGGTT
ATGACAATCTCATCCTCAGAGTTGAATGGGCCACTCCAAGGACTAACTAG
ATCGATCTATTTATCCTTGAGCTTTAACGGGATACAATATCAATTTTGTG
TATTATTTTATACTATCTTAAGTATTGAATGATCTTGGAGTGTTTTGTTG
AGAGACTATGGCTTTCCTACAAGTACTTTGTACTCGAGATGATTTAATTT
ATGCCGTAGGTTCAATGTTTTTCAATGTTATTTGATNTCTAATAAGATAC
CAGGCAACACT
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