DC900047

Overview
NameDC900047
Unique NameDC900047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900047 vs. ExPASy Swiss-Prot
Match: COBL3_ORYSJ (COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.481e-14
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 3 
Query:   27 GXSGNVQTEMLLHKDSGIFTFREGWGFPRRILFNGDECVMPLPDDYPRLPN 179
            G  GN Q+E+LL KDS  FTF +GW FP R+ FNGD CVMP PD YP LPN
Sbjct:  380 GPLGNAQSELLLRKDSKDFTFDKGWAFPHRVYFNGDNCVMPPPDAYPWLPN 430

HSP 2 Score: 20.7866 bits (42), Expect = 6.481e-14
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 2 
Query:    2 YNDMLLQAG 28
            YND+L+QAG
Sbjct:  372 YNDLLMQAG 380
[Close]
BLAST of DC900047 vs. ExPASy Swiss-Prot
Match: COBL2_ORYSJ (COBRA-like protein 2 OS=Oryza sativa subsp. japonica GN=BC1L2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.863e-13
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 3 
Query:   27 GXSGNVQTEMLLHKDSGIFTFREGWGFPRRILFNGDECVMPLPDDYPRLP 176
            G  GNVQ+E+L  KD   FTF +GW FPRRI FNG+ CVMP PD YP LP
Sbjct:  371 GPDGNVQSELLFRKDRSTFTFDKGWAFPRRIYFNGESCVMPSPDLYPWLP 420
The following BLAST results are available for this feature:
BLAST of DC900047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
COBL3_ORYSJ6.481e-1464.71COBRA-like protein 3 OS=Oryza sativa subsp. japoni... [more]
COBL2_ORYSJ5.863e-1364.00COBRA-like protein 2 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionDC900047 VSS Citrus sinensis cDNA clone VS27Q54 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900047 ID=DC900047; Name=DC900047; organism=Citrus sinensis; type=EST; length=565bp
CTACAATGACATGTTACTCCAAGCCGGGGNAGAGTGGAAATGTACAGACT
GAGATGTTACTGCACAAAGATTCTGGAATTTTCACTTTCAGAGAAGGATG
GGGATTTCCCAGAAGAATTTTGTTTAATGGTGATGAATGTGTGATGCCTC
TTCCAGATGATTATCCAAGGCTACCCAACAATGCCCATACTGCTGCTTCA
TCAAGTGCTTGCAGAATTTTCTTGCCACTGTTACTTCTTATAGTTATGTT
GTGATTCATTTTTGGCTTATTAGGAAAATCCATCTTCTTCATGTTAGAGA
TTCAATGCGAGAGCTTCTGAATATGATTTGTTTCTGTAGAGGAATCATGT
AAATGCCATTTTCCTGAAGGGAGAATCCTTAGACATGAAAGAGCAATAGA
GGTAATTTTCTTTTTACCATTTTCGGAAATTTAGAAAAGAAGCTGTTTCA
GAAATTCAATGCTGATCAAAAGCTTGTGTTTCGCAATACAGTTTGCTTGC
CATATAAGAGAAGATTTGGAAAGAGTTAATGAAATAATTAGTGAAATATG
GCAAAACTTGCAGCC
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