DC900030

Overview
NameDC900030
Unique NameDC900030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:168..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 56/141 (39.72%), Postives = 84/141 (59.57%), Query Frame = 2
Query:    5 RPNSQAPKLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 427
            RP        R+S   SKR+ +EL+ L        +A P  D++F W AT+ GP D+ +    + +++ FP DYP+KPP V F T  +HPN++ +G+ICLDILKE W+ +  +  +LLS+ SLL +PN   PL  + A M+
Sbjct:   18 RPRDMTTSKERHS--VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW 156          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 56/145 (38.62%), Postives = 82/145 (56.55%), Query Frame = 2
Query:   56 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 490
            +R+ KE+  L  DPP      P  +D+   Q  I GP  +P+AGG+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T  +A G
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTDIHAQG 158          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 51/140 (36.43%), Postives = 84/140 (60.00%), Query Frame = 2
Query:   62 INKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 439
            + ++L +L K+P    SAG + D D++ W+  I+GP D+ + GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DR
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 51/140 (36.43%), Postives = 84/140 (60.00%), Query Frame = 2
Query:   62 INKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 439
            + ++L +L K+P    SAG + D D++ W+  I+GP D+ + GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DR
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 51/140 (36.43%), Postives = 84/140 (60.00%), Query Frame = 2
Query:   62 INKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 439
            + ++L +L K+P    SAG + D D++ W+  I+GP D+ + GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DR
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 51/140 (36.43%), Postives = 83/140 (59.29%), Query Frame = 2
Query:   62 INKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE-------------QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 439
            + ++L +L K+P    SAG + D D++ W+  I+GP D+ + GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL E             +W P  T+  +++S+ S+L DPN D P   + A  ++ DR
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 55/143 (38.46%), Postives = 83/143 (58.04%), Query Frame = 2
Query:   56 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 484
            +++ KE+  L  DPP      P  +D+   Q +I GP  +P+AGG+F + +    D+P  PPK  F TK+FHPN++SNG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T+ +A
Sbjct:   14 RQVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHA 156          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 58/138 (42.03%), Postives = 79/138 (57.25%), Query Frame = 2
Query:   14 SQAPKLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 427
            S  P    +S    KR+  EL  L        SA P  D++F W+ TI G  D+ F G  + +S+ F  DYPFK PKV F T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:   25 SAPPTKTVDSHSVLKRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLW 162          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 54/145 (37.24%), Postives = 82/145 (56.55%), Query Frame = 2
Query:   56 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 490
            +R+ KE+  L  DPP      P  +D+   Q  I GP  +P+A G+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + A+  T+ +A G
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAKLMTEIHAQG 158          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 51/155 (32.90%), Postives = 88/155 (56.77%), Query Frame = 2
Query:   41 SQMASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTAR 463
            S  + + + K+LK++QK+PP   S G V D  +F W+  I+GP D+ + GG F  ++ FP DYP  PPK+ F T+++HPN++ NG +C+ IL              E+W P  +   +L+S+ S+L+ PN + P   + A  ++ +  +++   R
Sbjct:    3 SSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVR 157          
The following BLAST results are available for this feature:
BLAST of DC900030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2C_SPISO7.935e-2539.72Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UB2SB_XENLA7.935e-2538.62Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UB2G1_RAT7.935e-2536.43Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE7.935e-2536.43Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN7.935e-2536.43Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UB2G1_MACFA1.353e-2436.43Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UBE2S_RANCA1.768e-2438.46Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBC19_ARATH3.938e-2442.03Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UB2SC_XENLA5.143e-2437.24Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UBC15_SCHPO8.773e-2432.90Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionDC900030 VSS Citrus sinensis cDNA clone VS27Q38 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900030 ID=DC900030; Name=DC900030; organism=Citrus sinensis; type=EST; length=703bp
AGCCAGACCCAACTCTCAGGCCCCAAAGTTGTTGAGAAATTCCCAGATGG
CTTCAAAACGGATCAACAAGGAGTTGAAGGATCTACAGAAGGACCCTCCT
GCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATTGGCAAGC
AACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTATTTCTTG
TATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAAGGTGGCC
TTCCGTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGTAGCATCTG
TCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAATATCCAAGG
TACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAGATGACCCA
CTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCCAAATATGA
GACTACTGCTCGATCCTGGACTCAGAAGTATGCCATGGGTTAAGAGGGGC
TAGGCTGTATGCCCCTGAGAACATTAATGGCTTGTGGTCCTATTAGTAAA
TAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTTGGTTTTGT
TTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCAAATTTAGCAT
TGTTCTTCAATACTTAAATTATAATTTACTGCAGAATTGAGCTGCCTTTG
CCT
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