DC900030

Overview
NameDC900030
Unique NameDC900030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:168..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: U2D2L_HUMAN (Putative ubiquitin-conjugating enzyme E2 D2-like protein OS=Homo sapiens GN=UBE2DNL PE=5 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.227e-17
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query:   47 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFH 271
            MA K I+KE  +L +DP   CSAGPV DDM HWQATI  P+DS + GGVF   + FP DY FKPPK+ F   ++H
Sbjct:    1 MALKLIHKEFLELARDPQPHCSAGPVWDDMLHWQATITRPNDSSYLGGVFF--LKFPSDYLFKPPKIKFTNGIYH 73          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 51/168 (30.36%), Postives = 81/168 (48.21%), Query Frame = 2
Query:    2 ARPNSQAPKLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 484
            +R +S      R   +  + + KE+ +L+ + P +C       +  H+    + P +S + GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D+ +Y      + ++YA
Sbjct:   17 SRTSSTTSDSTRRVSVRDRLLVKEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 51/168 (30.36%), Postives = 81/168 (48.21%), Query Frame = 2
Query:    2 ARPNSQAPKLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 484
            +R  S     +R   +  + + KE+ +L+ + P +C       +  H+    + P +S + GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D+ +Y      + ++YA
Sbjct:   17 SRTTSTTLDSMRRISVRDRLLVKEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 46/124 (37.10%), Postives = 72/124 (58.06%), Query Frame = 2
Query:   11 NSQAPKLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 379
            +S AP     S++A+ R+ KEL + Q +PP       V D++  W   ++G   + +A   + + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct:    3 SSGAPSRKTLSKIATNRLQKELVEWQMNPPTGFKH-KVTDNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 49/148 (33.11%), Postives = 80/148 (54.05%), Query Frame = 2
Query:   50 ASKRINKELKDLQKD-PPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 487
            ASKR+ KEL DL K+ PP          ++  W   ++ P   P+    F + I FP +YP KPP + F TK++HPNI+ +G +CL ++  E W P     +VL ++  L++ PN ++P+  E+A +   D   +   A  +T +Y +
Sbjct:    3 ASKRVAKELDDLSKELPPYLRHLSSDDANVLVWHMLLL-PDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQYGV 149          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 46/124 (37.10%), Postives = 71/124 (57.26%), Query Frame = 2
Query:   11 NSQAPKLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 379
            +S AP     S++A  R+ KEL + Q +PP       V D++  W   + G   + +A   + + + FP  YP + P+V F +    HP+I SNG ICLDIL + WSPA+T++ V +SI S+L+
Sbjct:    3 SSSAPSRKALSKIACNRLQKELSEWQLNPPTGFRH-KVTDNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLS 125          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 47/145 (32.41%), Postives = 84/145 (57.93%), Query Frame = 2
Query:   62 INKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDIL--KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 487
            ++++  DL+++     +A PV++DM  W+  I G  +S + G VF ++IHF  +Y + PP V F T  FHPN++ + G  C+D L   E+W+   T+S +LL++  +L++P  ++P+  E A +   D + Y T  R + +   M
Sbjct:    9 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLFNRPLQM 153          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 52/168 (30.95%), Postives = 84/168 (50.00%), Query Frame = 2
Query:    5 RPNSQAPKLLRNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 484
            R ++ A    R   +  K + KE+ +L+ + P +C    P  + + ++Q T++ P +  + GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D+  +      + ++YA
Sbjct:   18 RASNPASDSTRRVSVRDKLLVKEVAELEANLPCTCKVNFPDPNKLHYFQLTVI-PDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 46/156 (29.49%), Postives = 83/156 (53.21%), Query Frame = 2
Query:   50 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL------------DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 478
            +S R + E+   +  P      G V D ++F WQ TI+GP ++ + GG F   + FP +YP  PP V F ++++HPN+  +G +C+            ++  E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  + +++   R   +K
Sbjct:   10 SSSRSSSEIS--RTTPSMGFQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRK 163          
BLAST of DC900030 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.953e-17
Identity = 46/124 (37.10%), Postives = 70/124 (56.45%), Query Frame = 2
Query:   11 NSQAPKLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 379
            +S +P     S++A  R+ KEL + Q +PP       V D++  W   + G   + +A   + + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S V +SI S+L+
Sbjct:    3 SSSSPSRKALSKIACNRLQKELSEWQVNPPTGFKHR-VTDNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 125          
The following BLAST results are available for this feature:
BLAST of DC900030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
U2D2L_HUMAN1.227e-1756.00Putative ubiquitin-conjugating enzyme E2 D2-like p... [more]
UBE2F_XENTR1.602e-1730.36NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]
UBE2F_XENLA1.602e-1730.36NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
UBC16_ARATH1.602e-1737.10Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UB2L6_RAT2.093e-1733.11Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UBC15_ARATH3.570e-1737.10Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBE2U_HUMAN4.662e-1732.41Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBE2F_CHICK4.662e-1730.95NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]
UBC7_WHEAT6.089e-1729.49Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC18_ARATH7.953e-1737.10Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900030 VSS Citrus sinensis cDNA clone VS27Q38 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900030 ID=DC900030; Name=DC900030; organism=Citrus sinensis; type=EST; length=703bp
AGCCAGACCCAACTCTCAGGCCCCAAAGTTGTTGAGAAATTCCCAGATGG
CTTCAAAACGGATCAACAAGGAGTTGAAGGATCTACAGAAGGACCCTCCT
GCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATTGGCAAGC
AACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTATTTCTTG
TATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAAGGTGGCC
TTCCGTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGTAGCATCTG
TCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAATATCCAAGG
TACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAGATGACCCA
CTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCCAAATATGA
GACTACTGCTCGATCCTGGACTCAGAAGTATGCCATGGGTTAAGAGGGGC
TAGGCTGTATGCCCCTGAGAACATTAATGGCTTGTGGTCCTATTAGTAAA
TAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTTGGTTTTGT
TTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCAAATTTAGCAT
TGTTCTTCAATACTTAAATTATAATTTACTGCAGAATTGAGCTGCCTTTG
CCT
back to top