DC900028

Overview
NameDC900028
Unique NameDC900028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4378 contig Csv1_Contig4378:57..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900028 vs. ExPASy Swiss-Prot
Match: HMGB1_BOVIN (High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 3
Query:  189 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 416
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165          
BLAST of DC900028 vs. ExPASy Swiss-Prot
Match: HMGB1_PIG (High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 3
Query:  189 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 416
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYRAK 165          
BLAST of DC900028 vs. ExPASy Swiss-Prot
Match: HMGB2_RAT (High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 3
Query:  189 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 416
            DPN PKRP SAFF+F  E R + K +HP   S+    K  GE W   S  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165          
BLAST of DC900028 vs. ExPASy Swiss-Prot
Match: HMGB2_PIG (High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 3
Query:  189 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 416
            DPN PKRP SAFF+F  E R + K +HP   S+    K  GE W   S  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165          
BLAST of DC900028 vs. ExPASy Swiss-Prot
Match: HMGB2_HUMAN (High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 3
Query:  189 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 416
            DPN PKRP SAFF+F  E R + K +HP   S+    K  GE W   S  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165          
BLAST of DC900028 vs. ExPASy Swiss-Prot
Match: HMGB2_BOVIN (High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 3
Query:  189 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 416
            DPN PKRP SAFF+F  E R + K +HP   S+    K  GE W   S  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165          
BLAST of DC900028 vs. ExPASy Swiss-Prot
Match: HMGB1_CHICK (High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 3
Query:  189 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 416
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++S+ +K PY  KA K K +YEKD+ +Y  +
Sbjct:   88 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSK 162          
BLAST of DC900028 vs. ExPASy Swiss-Prot
Match: HMGB2_CHICK (High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 36/76 (47.37%), Postives = 42/76 (55.26%), Query Frame = 3
Query:  189 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 416
            DPN PKRP SAFF+F  E R + K DHP   S+    K  GE W      DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165          
BLAST of DC900028 vs. ExPASy Swiss-Prot
Match: HMGB2_MOUSE (High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 3
Query:  189 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 416
            DPN PKRP SAFF+F  E R + K +HP   S+    K  GE W   S  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165          
BLAST of DC900028 vs. ExPASy Swiss-Prot
Match: SSRP1_RAT (FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 3
Query:  189 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 434
            DPN PKRP SA+ +++   RE+ K DHP   S+  + K  GE WK MS+  K  +  KAE  + EYEK MK Y   + + +K
Sbjct:  543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSK 623          
The following BLAST results are available for this feature:
BLAST of DC900028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HMGB1_BOVIN1.578e-1247.37High mobility group protein B1 OS=Bos taurus GN=HM... [more]
HMGB1_PIG2.061e-1247.37High mobility group protein B1 OS=Sus scrofa GN=HM... [more]
HMGB2_RAT2.691e-1247.37High mobility group protein B2 OS=Rattus norvegicu... [more]
HMGB2_PIG2.691e-1247.37High mobility group protein B2 OS=Sus scrofa GN=HM... [more]
HMGB2_HUMAN2.691e-1247.37High mobility group protein B2 OS=Homo sapiens GN=... [more]
HMGB2_BOVIN2.691e-1247.37High mobility group protein B2 OS=Bos taurus GN=HM... [more]
HMGB1_CHICK2.691e-1246.05High mobility group protein B1 OS=Gallus gallus GN... [more]
HMGB2_CHICK4.591e-1247.37High mobility group protein B2 OS=Gallus gallus GN... [more]
HMGB2_MOUSE1.023e-1147.37High mobility group protein B2 OS=Mus musculus GN=... [more]
SSRP1_RAT1.336e-1142.68FACT complex subunit SSRP1 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionDC900028 VSS Citrus sinensis cDNA clone VS27Q36 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900028 ID=DC900028|Name=DC900028|organism=Citrus sinensis|type=EST|length=712bp
TCTGCGTCTCTCTCTTTTTCTCTTTCCTCTTTTTCTCTCATTTGAAGCCC
TAACCCTAGCTCTATCTTTCTTCAGAAACAGGATTTGAAATGAAAGGAGG
TAAATCAAAGTCAGATACCAGAAACGCCAAGCTCTCTGTGAACAAGAAGC
CTGCCAAAGCTGGACGAAAATCGGGAAAGGCAGCTAAGGACCCGAACAAG
CCAAAGAGGCCAGCCAGCGCCTTCTTTGTTTTCATGGAAGAATTCCGTGA
ACAATACAAGAAGGATCATCCTAAGAACAAATCAGTTGCTGCTGTTGGTA
AAGCTGGTGGTGAGAAATGGAAGTCAATGTCTGAAGCTGATAAAGCACCG
TATGTTGCTAAGGCAGAGAAGCGCAAGGTTGAGTATGAGAAGGATATGAA
AAACTACAATAGGAGACAGGCGGAGGGAACTAAGCCGGAGGAAGAAGAGG
AGTCTGAGAAGTCTATGTCAGAGGTGAATGATGAGGATGATGATGAAGAA
GGCAGTGGCGAGGAGGATGATGATGAATAGAAGTTGAAGGAAGAAATTAG
CATAGTCATGTTAGGCTGTGACAATGTTTCAAACAACATATGTTAATGCT
TGNGCTTCCATGTTAATTTTTTGGATGCTTTCATCATCTTCATCATCATG
TAGAGATCATGTTGCTTCTNCCTCGACATTTTCTTATGCCTGCCTTTCAA
GAATAATAGCTG
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