DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:314..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLA (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates lar GN=PPIA PE=3 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 3.930e-28
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMANAGP TNGSQ F+CTAKT WLDGKH VFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   86 ENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_HUMAN (Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 3.930e-28
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMANAGP TNGSQ F+CTAKT WLDGKH VFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   86 ENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_GORGO (Peptidyl-prolyl cis-trans isomerase A OS=Gorilla gorilla gorilla GN=PPIA PE=3 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 3.930e-28
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMANAGP TNGSQ F+CTAKT WLDGKH VFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   86 ENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_CERAE (Peptidyl-prolyl cis-trans isomerase A OS=Cercopithecus aethiops GN=PPIA PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 3.930e-28
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMANAGP TNGSQ F+CTAKT WLDGKH VFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   86 ENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_PIG (Peptidyl-prolyl cis-trans isomerase A OS=Sus scrofa GN=PPIA PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 6.704e-28
Identity = 55/79 (69.62%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMANAGP TNGSQ F+CTAKT WLDGKH VFG+V EGM++V+A+E+ GS +G+T+K + IADCGQ+
Sbjct:   86 ENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_BOVIN (Peptidyl-prolyl cis-trans isomerase A OS=Bos taurus GN=PPIA PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 6.704e-28
Identity = 55/79 (69.62%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMANAGP TNGSQ F+CTAKT WLDGKH VFG+V EGM++V+A+E+ GS +G+T+K + IADCGQ+
Sbjct:   86 ENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 8.755e-28
Identity = 55/79 (69.62%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMANAGP TNGSQ F+CTAKT WLDGKH VFG+V EGM++V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:   86 ENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_FELCA (Peptidyl-prolyl cis-trans isomerase A OS=Felis catus GN=PPIA PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 8.755e-28
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMANAGP TNGSQ F+CTAKT WLDGKH VFG V EGM++V+A+E+ GS +G+T+K + IADCGQ+
Sbjct:   86 ENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 8.755e-28
Identity = 55/79 (69.62%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMANAGP TNGSQ F+CTAKT WLDGKH VFG+V EGM++V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:   86 ENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.755e-28
Identity = 58/82 (70.73%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 270
            P E   +K   PG+LSMANAGP TNGSQ F+CT  T WLDGKH VFGQVVEGMDVVKAIEKVG+ +G T+K V +ADCGQLS
Sbjct:   91 PDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PPIA_HYLLA3.930e-2870.89Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HUMAN3.930e-2870.89Peptidyl-prolyl cis-trans isomerase A OS=Homo sapi... [more]
PPIA_GORGO3.930e-2870.89Peptidyl-prolyl cis-trans isomerase A OS=Gorilla g... [more]
PPIA_CERAE3.930e-2870.89Peptidyl-prolyl cis-trans isomerase A OS=Cercopith... [more]
PPIA_PIG6.704e-2869.62Peptidyl-prolyl cis-trans isomerase A OS=Sus scrof... [more]
PPIA_BOVIN6.704e-2869.62Peptidyl-prolyl cis-trans isomerase A OS=Bos tauru... [more]
PPIA_MOUSE8.755e-2869.62Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
PPIA_FELCA8.755e-2869.62Peptidyl-prolyl cis-trans isomerase A OS=Felis cat... [more]
PPIA_CRIGR8.755e-2869.62Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
CYPH_MAIZE8.755e-2870.73Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]

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Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
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