DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:314..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_SAGOE (Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.143e-27
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMANAGP TNGSQ F+CT KT WLDGKH VFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   86 ENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.143e-27
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMANAGP TNGSQ F+CTAKT WLDGKH VFG+V EGM +V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:   86 ENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMSIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.143e-27
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMANAGP TNGSQ F+CT KT WLDGKH VFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   86 ENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 3.327e-27
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMANAGP TNGSQ F+CTAKT WLDGKH VFG+V EGM +V+A+E  GS +G+T+K + IA+CGQL
Sbjct:   86 ENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQL 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 9.680e-27
Identity = 55/81 (67.90%), Postives = 63/81 (77.78%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            P EN  +KHTGPG+LSMANAGP TNGSQ F+CT KT WLDGKH VFG+VVEG+D+V  +E  GSSSG      +IADCGQL
Sbjct:   91 PDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.264e-26
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGIL MANAGP TNGSQ F+ TAKT WLD +H VFG VVEGMDVVK +E +GS SG+TNK + + DCGQ+
Sbjct:   86 ENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQI 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.264e-26
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN  +KHTGPG+LSMAN G  TNGSQ F+CT KT WLDGKH VFG+V+EGMDVVKAIE  GS  G  + P VIADCG++
Sbjct:   93 ENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.195e-26
Identity = 54/79 (68.35%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPG LSMANAG  TNGSQ F+CT KT WLDGKH VFGQVV GM+VV+ +E+ GS+SG+ +K VVI DCG+L
Sbjct:  237 ENFVLKHTGPGTLSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVVSGMNVVREMERCGSASGKPSKRVVIVDCGEL 315          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.070e-25
Identity = 54/79 (68.35%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPGILSMAN+GP TNGSQ F+CT KT WLDGKH VFG+VV+G +VVKA+E VGS  G  ++ VVI DCG+L
Sbjct:   93 ENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.826e-25
Identity = 52/79 (65.82%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHT PGILSMANAG  TNGSQ F+CTA T WLDGKH VFG V +G+D++K +E  GS SG+T+K + IADCGQL
Sbjct:   86 ENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PPIA_SAGOE1.143e-2769.62Peptidyl-prolyl cis-trans isomerase A OS=Saguinus ... [more]
PPIA_RAT1.143e-2769.62Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
PPIA_AOTTR1.143e-2769.62Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
PPIA_RABIT3.327e-2769.62Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
CYP7_CAEEL9.680e-2767.90Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
PPIA_BLAGE1.264e-2668.35Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
CYP2_CAEEL1.264e-2668.35Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
PPIE_RHIOR8.195e-2668.35Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
CP19C_ARATH1.070e-2568.35Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
PPIA_HEMPU1.826e-2565.82Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]

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Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
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