DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:314..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.826e-25
Identity = 55/79 (69.62%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPG LSMANAGP TNGSQ F+CT  T WLDG H VFGQV +GM VVK IEK+GS SG   K V IADCG+L
Sbjct:  111 ENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 4.067e-25
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            P EN   KHTG GILSMANAG  TNGSQ F+CT KT WLD KH VFG+VVEG+DVVK IE  GS SG+T+K +++A+ G L
Sbjct:  147 PDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.312e-25
Identity = 55/79 (69.62%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH G G LSMANAG  TNGSQ F+C A T WLDGKH VFG V EGMDVVK +E  GS SG+T KPVVIA+CGQL
Sbjct:  101 ENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.545e-24
Identity = 54/80 (67.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 267
            EN    H GPG+LSMANAGP TNGSQ F+CT KT WLDG+H VFGQV+EGM+VVK IE+  +  G R  K VVIADCGQL
Sbjct:  175 ENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.308e-23
Identity = 51/71 (71.83%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNK 237
            P EN   KH GPG+LSMANAGP TNGSQ F+CT KT WLDGKH VFG V EGMDVVK IE  GS SG+T+K
Sbjct:  127 PDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSK 197          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.308e-23
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 264
            EN  +KHTG GILSMANAGP TNGSQ F+CTAKT WLDGKH  FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   86 ENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.232e-23
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   +H G G+LSMAN+GP TNGSQ F+CT K  WLDGKH VFG+VV+G +VVK +E VGS SG+  +PV+I+ CG+L
Sbjct:  194 ENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.972e-23
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   +H G G+LSMAN+GP TNGSQ F+CT K  WLDGKH VFG+VV+G +VVK +E VGS SG+  +PV I+ CG+L
Sbjct:  100 ENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGEL 178          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.972e-23
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 264
            EN  +KHTG GILSMANAGP TNGSQ F+C AKT WLDGKH  FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   86 ENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.493e-23
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 264
            EN   KHTGPG+LSMAN+GP TNGSQ F+   KT WLDGKH VFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  222 ENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYP1_CAEEL1.826e-2569.62Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PPIA_DROME4.067e-2565.43Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PPIA_DICDI5.312e-2569.62Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
CP20B_ARATH1.545e-2467.50Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIF_BOVIN1.308e-2371.83Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PAL4A_HUMAN1.308e-2362.82Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPIE_SCHMA2.232e-2360.76Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PPIE_SCHJA4.972e-2360.76Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
PAL4B_HUMAN4.972e-2361.54Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
PPIE_HUMAN6.493e-2361.54Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
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