DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:314..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.480e-23
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 264
            EN   KHTGPG+LSMAN+GP TNGSQ F+   KT WLDGKH VFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  222 ENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.480e-23
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 261
            P EN   KH  PG+LSMANAGP TNGSQ F+ T  T WLDGKH VFG+V EGMDVVK +E +GS+SG T   +VI  CG
Sbjct:   82 PDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCG 160          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.108e-22
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 264
            EN   KHTGPG+LSMAN+GP TNGSQ F+   KT WLDGKH VFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  222 ENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.108e-22
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPG LSMANAGP TNGSQ F+ T K  WLDGKH VFG+V EGMDVV+ IE +GS +G     ++I +CGQL
Sbjct:   86 ENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQL 164          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.467e-22
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN  K+H  PG+LSMANAGP TNGSQ F+ T    WLDGKH VFG+V +G+D+VK IE  GS SG T+K +VI + GQL
Sbjct:   84 ENFVKRHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIESFGSGSGATSKKIVIEESGQL 162          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.223e-22
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH+ P +LSMANAG  TNGSQ F+ TA T WLDGKH VFG+V  G DVVK +E VGSSSG+T++ V+I DCGQL
Sbjct:   84 ENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.209e-22
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 264
            EN   KHTGPG+LSMAN+GP TNGSQ F+   KT WLDGKH VFG++ +G+DV++ IE  GS  G+  + V+I+DCG+
Sbjct:  222 ENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPH_UROFA (Peptidyl-prolyl cis-trans isomerase OS=Uromyces fabae GN=PIG28 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.497e-22
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMD-VVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN  KKH   G+LSMANAGP TNGSQ F+   KT WLDGKH VFG+V+EG D VVKA+EK GS SG+T+  + I DCG L
Sbjct:   84 ENFQKKHVERGMLSMANAGPNTNGSQFFITVTKTPWLDGKHVVFGKVIEGYDQVVKAMEKTGSQSGKTSSVLKIEDCGTL 163          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.179e-22
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 267
            EN   +HTGPGILSMANAG  TNGSQ F+ T  T WLDG+H VFG+V+EGMDVV AIE   +  G R   PV+IADCG+L
Sbjct:  112 ENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.089e-21
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 267
            P EN   KHTGPG+LSMANAG  TNGSQ F+CT KT WLD +H VFG V+EGMDVV A+E V +S G +  +P+ IA  G+L
Sbjct:  131 PDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGEL 212          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PPIE_PONAB8.480e-2361.54Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
CYPH_SCHPO8.480e-2363.29Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
PPIE_MOUSE1.108e-2261.54Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
PPIA1_RHIOR1.108e-2263.29Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
PPIA_CANAL2.467e-2260.76Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
PPIA_ECHGR3.223e-2264.56Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
PPIE_BOVIN4.209e-2257.69Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
CYPH_UROFA5.497e-2263.75Peptidyl-prolyl cis-trans isomerase OS=Uromyces fa... [more]
PPIB_ORPSP7.179e-2263.75Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPIB_CRYNE2.089e-2160.98Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]

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Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
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