DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:314..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.429e-19
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSS--SGRTNKPVVIADCGQL 267
            E+   KH GPG+LSMANAGP TNGSQ F+CT  T WLD +H VFG V+EG+DVVK +E   +S       KP  IA  G+L
Sbjct:  164 ESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGEL 244          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 9.703e-19
Identity = 46/82 (56.10%), Postives = 57/82 (69.51%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 267
            P EN   KH GPG +SMANAG  TNGSQ F+ T KT WLDGKH VFG+V+EGMDVV+ +E   + S  +  K V+I D G++
Sbjct:  124 PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKI 205          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.703e-19
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 267
            EN   +H GPG LSMANAG  TNGSQ F+ TAKT WLDGKH VFG+++EGMDVV+ IE     +G R  + VVIA+ G +
Sbjct:  108 ENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVIANAGHI 187          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.267e-18
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 267
            EN   +H+ PG+LSMANAG  TNGSQ F+ T  T WLDGKH VFG+V+EGMDVV  IE   + +G  +KP   VVIADCG L
Sbjct:  116 ENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIE--NTPTGSRSKPSVDVVIADCGLL 195          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.267e-18
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH G G+LSMANAGP TNGSQ F+    T WLDG H VFGQ+V+G  V+  +E+ GS SG  +  + I DCG+L
Sbjct:   96 ENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSGMPSAKIEITDCGEL 174          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.655e-18
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 267
            P EN   KH G G LSMANAGP TNG+Q F+ T +  WLDGKH VFG+VVEGM VV+ IE + + S  R  K V IA+CG +
Sbjct:  117 PDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKIANCGHI 198          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.687e-18
Identity = 45/80 (56.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 270
            EN   KH  P +LSMANAGP TNGSQ FV T  T  LDGKH VFG+V+ G  VV+ IE + +   +  K  VIADCG+LS
Sbjct:  101 ENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKTQGDKPTKDAVIADCGELS 180          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 4.815e-18
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   +H  PG+LSMAN+GP TNG Q F+ T  T +L+GKH VFGQV++GMD+V+ IE   ++  + N+ VVI  CG++
Sbjct:  105 ENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVIDGMDIVRMIENTRTTRDKPNQDVVIIQCGEM 183          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIH_NEUCR (Peptidyl-prolyl cis-trans isomerase H OS=Neurospora crassa GN=cyp-3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.214e-18
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 267
            EN   KH  PG+LSMANAGP TNGSQ F+ T  T +LDGKH VFG+VV+GMDVVK +E   +     + P   VVIA CG++
Sbjct:  101 ENFLLKHDTPGLLSMANAGPNTNGSQFFITTVPTPFLDGKHVVFGKVVDGMDVVKKMENTKTGYRGKDVPNLDVVIAQCGEM 182          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.214e-18
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH  PG+LSMAN+GP TNG Q F+ T  T +L+ KH VFGQVVEGMDVV+ IE   ++  + N+ V I  CG++
Sbjct:  103 ENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTRDKPNQDVTIIQCGEM 181          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYPB_VICFA7.429e-1955.56Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
PPIB_MOUSE9.703e-1956.10Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
CYP6_CAEEL9.703e-1958.75Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
PPIB1_RHIOR1.267e-1859.76Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]
CYP6_RHIOR1.267e-1854.43Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPIB_SCHJA1.655e-1857.32Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPID_NEUCR3.687e-1856.2541 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
PPIH_EMENI4.815e-1850.63Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]
PPIH_NEUCR8.214e-1856.10Peptidyl-prolyl cis-trans isomerase H OS=Neurospor... [more]
PPIH_ASPOR8.214e-1853.16Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]

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Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
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