DC900011

Overview
NameDC900011
Unique NameDC900011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: LRKA3_ARATH (Lectin-domain containing receptor kinase A4.3 OS=Arabidopsis thaliana GN=LECRKA4.3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.354e-17
Identity = 54/149 (36.24%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQ-HAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVM 571
            +IHRD+K SNVL+D +   R+ DFG+ARL     +    + + GT GY+ PE  ++   S+  DV+++GV+LLE+++G++PTDS  F    +  WV +  A  +I    DP L       E  L   L V   C   +P  RP M  V+
Sbjct:  487 VIHRDVKPSNVLIDSDMNPRLGDFGLARLYER-GSQSCTTVVVGTIGYMAPELARNGNSSSASDVFAFGVLLLEIVSGRKPTDSGTF---FIADWVMELQASGEILSAIDPRLGSGYDEGEARLA--LAVGLLCCHHKPESRPLMRMVL 629          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.084e-16
Identity = 55/151 (36.42%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMD-THLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDN-NLVGW-VKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVM 571
            IIHRD+KS+N+LLD N+ A+V+DFG++R    +D TH+S   + G+ GY+ PEY++  + + K DVYS+GVVL E+L  +   D     +  NL  W ++   K  +  + DP +  E       L +    A  C  D    RPT+  V+
Sbjct:  609 IIHRDIKSTNILLDNNYVAKVADFGLSRSGPCIDETHVSTG-VKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPAVDPLLVREQVNLAEWAIEWQRKGMLDQIVDPNIADEIK--PCSLKKFAETAEKCCADYGVDRPTIGDVL 756          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: FLS2_ARATH (LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.084e-16
Identity = 59/177 (33.33%), Postives = 93/177 (52.54%), Query Frame = 2
Query:  104 NSARGIPHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMD---THLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPT-----DSADFGDNNLVGWVKQHAKLKISDVFDPEL------MKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEIQ 592
            +S  G P I+H D+K +N+LLD +  A VSDFG AR++   +   T  S S   GT GY+ PE+    + +TK DV+S+G++++EL+T +RPT     DS D     LV     + +  +  V D EL      +K++  IE      L +   C   RP  RP M +++    +++
Sbjct:  986 HSGYGFP-IVHCDLKPANILLDSDRVAHVSDFGTARILGFREDGSTTASTSAFEGTIGYLAPEFAYMRKVTTKADVFSFGIIMMELMTKQRPTSLNDEDSQDMTLRQLVEKSIGNGRKGMVRVLDMELGDSIVSLKQEEAIE----DFLKLCLFCTSSRPEDRPDMNEILTHLMKLR 1157          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.415e-16
Identity = 55/153 (35.95%), Postives = 88/153 (57.52%), Query Frame = 2
Query:  131 IHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDN-NLVGWVKQHAKL-KISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFK 583
            +HRD+K++N+LLD++   ++SDFG+ARL     TH+S + +AGT GY+ PEY      + K DVYS+GV++LE++ G   ++    GD+  L+ +  +  +   +  V D  L  E    E E +  + VA  C    P  RP M +V+AM +
Sbjct:  804 VHRDIKATNILLDKDLTPKISDFGLARLDEEEKTHIS-TKVAGTIGYMAPEYALWGYLTFKADVYSFGVLVLEIVAGITNSNFMGAGDSVCLLEFANECVESGHLMQVVDERLRPEVDRKEAEAV--IKVALVCSSASPTDRPLMSEVVAMLE 953          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.415e-16
Identity = 57/152 (37.50%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMD-THLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDN-NLVGW-VKQHAKLKISDVFDPELMKEDPNIEIELLQHL-HVASACLDDRPWRRPTMIQVM 571
            +IHRD+KS+N+LLDENF A+V+DFG+++    +D TH+S + + G+ GY+ PEY++  + + K DVYS+GVVL E+L  +   D     +  NL  W +K   K ++  + D  L     NI  + L+        CL D    RP+M  V+
Sbjct:  605 VIHRDVKSANILLDENFMAKVADFGLSKTGPELDQTHVS-TAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKKGQLDQIIDQSLR---GNIRPDSLRKFAETGEKCLADYGVDRPSMGDVL 752          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.154e-16
Identity = 60/167 (35.93%), Postives = 94/167 (56.29%), Query Frame = 2
Query:  107 SARGIPH--------IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMD-THLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDN-NLVGW-VKQHAKLKISDVFDPELM-KEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVM 571
            SARG+ +        +IHRD+KS+N+LLDEN  A+V+DFG+++    +D TH+S + + G+ GY+ PEY++  + + K DVYS+GVV+ E+L  +   D     +  NL  W +K   K ++  + DP L  K  P+    L +       CL D    RP+M  V+
Sbjct:  587 SARGLHYLHTGDAKPVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVS-TAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVMFEVLCARPVIDPTLTREMVNLAEWAMKWQKKGQLEHIIDPSLRGKIRPD---SLRKFGETGEKCLADYGVDRPSMGDVL 749          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: Y4391_ARATH (Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.154e-16
Identity = 61/167 (36.53%), Postives = 91/167 (54.49%), Query Frame = 2
Query:  107 SARGIPH--------IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDN--NLVGWVKQ-HAKLKISDVFDPELMKE-DPNIEIELLQHLHVASACLDDRPWRRPTMIQVM 571
            SARG+ +        IIHRD+KS+N+LLDE   A+V+DFG+++ ++    H+S + + G+ GY+ PEY++  + + K DVYS+GVVLLE L   RP  +        NL  W  Q   K  +  + DP L    +P     + +    A  CL+D    RPTM  V+
Sbjct:  631 SARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGLSKDVAFGQNHVS-TAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLEALCA-RPAINPQLPREQVNLAEWAMQWKRKGLLEKIIDPHLAGTINPE---SMKKFAEAAEKCLEDYGVDRPTMGDVL 792          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: CRK23_ARATH (Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.379e-16
Identity = 50/153 (32.68%), Postives = 83/153 (54.25%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGD--NNLVGWV-KQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAM 577
            IIHRD+K+ N+LLD +   +V+DFGMAR+     T  +   + GT GY+ PEY    + S K DVYS+GV++ E+++G + +      D  +NLV +  +  +     D+ DP     D     ++ + +H+A  C+ +    RP M  ++ M
Sbjct:  629 IIHRDLKAGNILLDADMNPKVADFGMARIFGMDQTEANTRRVVGTYGYMAPEYAMYGQFSMKSDVYSFGVLVFEIISGMKNSSLYQMDDSVSNLVTYTWRLWSNGSQLDLVDPSF--GDNYQTHDITRCIHIALLCVQEDVDDRPNMSAIVQM 779          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: CCR12_ARATH (Serine/threonine-protein kinase-like protein At1g28390 OS=Arabidopsis thaliana GN=At1g28390 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.025e-16
Identity = 48/155 (30.97%), Postives = 85/155 (54.84%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEIQ 592
            +IHRD+KS NVL+D +  AR++DFG+A + +  D  L  +  AGT GY+ P Y      + K DV+S+G++LLE+++G+   D  ++  + +V W     K    D      +K  P   + + +   +A+ C+     +RP M++V+   K ++
Sbjct:  182 VIHRDIKSCNVLIDGDGNARLADFGLALIGNVDDERLKYTPPAGTLGYLDPSYLAPADLTAKSDVFSFGILLLEIISGREAID-LNYSPSCIVDWAVPLIKRGDYDAICDLKIKNRPYYAV-IRKLAVMAARCVRSTAKKRPDMLEVVECLKTVR 334          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: Y9871_DICDI (Probable serine/threonine-protein kinase DDB_G0271682 OS=Dictyostelium discoideum GN=DDB_G0271682 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.198e-15
Identity = 51/154 (33.12%), Postives = 77/154 (50.00%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFK 583
            P IIHRD+KS N+L+D NF  +VSDFG++R +S      S  T  GT  ++ PE +     +TK DVYS+G+VL E+LT K+P+                   +  + +  PEL    P    +L++       C +  P +RP   Q++   K
Sbjct:  478 PPIIHRDLKSLNLLVDNNFNVKVSDFGLSRFISG-GIGSSAKTFCGTLSWIAPEVFNGSGYTTKVDVYSFGIVLWEILTHKQPS-----------------GNISATSLGHPELPSNCPQSFSDLIKE------CCNRNPDQRPNFSQILLKLK 607          
The following BLAST results are available for this feature:
BLAST of DC900011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 291
Match NameE-valueIdentityDescription
LRKA3_ARATH6.354e-1736.24Lectin-domain containing receptor kinase A4.3 OS=A... [more]
Y5241_ARATH1.084e-1636.42Probable receptor-like protein kinase At5g24010 OS... [more]
FLS2_ARATH1.084e-1633.33LRR receptor-like serine/threonine-protein kinase ... [more]
RKF1_ARATH2.415e-1635.95Probable LRR receptor-like serine/threonine-protei... [more]
HERK_ARATH2.415e-1637.50Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
Y5597_ARATH3.154e-1635.93Probable receptor-like protein kinase At5g59700 OS... [more]
Y4391_ARATH3.154e-1636.53Probable receptor-like protein kinase At4g39110 OS... [more]
CRK23_ARATH5.379e-1632.68Putative cysteine-rich receptor-like protein kinas... [more]
CCR12_ARATH7.025e-1630.97Serine/threonine-protein kinase-like protein At1g2... [more]
Y9871_DICDI1.198e-1533.12Probable serine/threonine-protein kinase DDB_G0271... [more]

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Properties
Property NameValue
Genbank descriptionDC900011 VSS Citrus sinensis cDNA clone VS27Q22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900011 ID=DC900011; Name=DC900011; organism=Citrus sinensis; type=EST; length=850bp
GTTTTTTTTTTTTTTTTTTTAGAGAAAATAGAAATTTTTATATATTAAAA
GGGAAAGGAAGAAACAGACTAGAAAAAAAAAAACTCGAGACTAGCTCGTG
CCGAATTCGGCACGAGGCATCCCACACATTATCCACCGGGATATGAAATC
GAGCAATGTTCTGCTAGACGAAAACTTTGAGGCCAGAGTCTCAGATTTTG
GAATGGCAAGACTAATGAGTGCGATGGATACACATTTGAGTGTCAGTACG
CTAGCAGGCACACCCGGCTATGTCCCTCCCGAATACTATCAAAGCTTTAG
ATGTTCGACGAAAGGCGATGTTTACAGTTATGGTGTAGTTTTGCTCGAGT
TGCTAACGGGAAAAAGGCCAACAGATTCAGCAGATTTCGGTGACAATAAC
CTAGTTGGGTGGGTAAAGCAGCATGCGAAGCTGAAAATAAGCGATGTCTT
TGATCCAGAACTCATGAAAGAGGATCCAAACATCGAGATTGAGCTTCTTC
AACACTTGCATGTAGCGAGTGCTTGCCTGGATGATCGACCATGGAGGAGA
CCGACAATGATTCAGGTTATGGCAATGTTTAAAGAAATCCAAGCCGGTTC
AGGACTTGACTCGCAATCTACTATTGCCACTGATGAAGGAGGTTTCGGTA
CAGTCGAAATGGTAGAGATGAGCATCCAAGAAGCTCCAGAACTAAGCACC
AAGCCTTAGNCCATTCAATTTTCAGGACAAGCATTCTTTCAGTGCCCCAA
AATTTTCCCACTTGAAAACCAAAAAAGTTGCCTTTGGTATCTCTACCATT
TAGTGTATGTAATCTTTGTATCCCTTTTGAAAATTCTTGTTATTTATACA
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