CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:33..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM2_MAIZE (Superoxide dismutase [Mn] 3.2, mitochondrial OS=Zea mays GN=SODA.1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 4.010e-85
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH NHSIFW+NL P+ EGG EPPH  LGWAID  FGS EAL+++M+AEGAALQGSGWVWL LD E K+L VETTANQDPLVTK  +LVPLLGIDVWEHAYYLQYKNV+PDYL NIW VMNWKYA +VY+
Sbjct:  101 GHFNHSIFWENLKPISEGG-EPPHGKLGWAIDEDFGSFEALVKRMNAEGAALQGSGWVWLALDKEPKKLSVETTANQDPLVTKGASLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 228

HSP 2 Score: 116.701 bits (291), Expect = 4.010e-85
Identity = 60/99 (60.61%), Postives = 70/99 (70.71%), Query Frame = 2 
Query:   38 MALRSLATRKAI-----GLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            MALR+LA++ A+     G  +      RG+ TV LPDL YD+ ALEP ISGEIM+LHHQKHH  YV NYNKA+EQL   + K D S VVQLQGAIKFNG
Sbjct:    1 MALRTLASKNALSFALGGAARPSAASARGVTTVALPDLSYDFGALEPVISGEIMRLHHQKHHATYVVNYNKALEQLDAVVVKGDASAVVQLQGAIKFNG 99
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_DICDI (Superoxide dismutase [Mn], mitochondrial OS=Dictyostelium discoideum GN=sod2 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.478e-60
Identity = 77/128 (60.16%), Postives = 92/128 (71.88%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GHVNHSIFW NLAP ++ GG  P   L  AI+  +GS+E LI+KMSAE  A+QGSGW WLG D    RLV++T  NQDPL       VPLLGIDVWEHAYYL YKNV+ DY+KNIW ++NWK  ++ Y
Sbjct:   96 GHVNHSIFWTNLAPKNQDGGVAPSGPLADAINKQYGSIEKLIEKMSAETTAIQGSGWGWLGYDKANDRLVIQTQQNQDPLSVSG--YVPLLGIDVWEHAYYLDYKNVRADYVKNIWQIVNWKNVAERY 221

HSP 2 Score: 89.7373 bits (221), Expect = 1.478e-60
Identity = 51/96 (53.12%), Postives = 62/96 (64.58%), Query Frame = 2 
Query:   38 MALRSLATRKAIGLGKSVGLGLRGLQT--VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            M  RSL   K +G  +S GL   G Q+   TLPDLPYDY AL P IS EIM LHH+KHHQ YV N N A+++L  A +  D + ++ LQ AIKFNG
Sbjct:    1 MLPRSLKLIKKVG--ESNGLRNFGSQSNSYTLPDLPYDYGALSPVISPEIMTLHHKKHHQTYVNNLNIALDKLSSASSAKDVAQMIALQSAIKFNG 94
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MOUSE (Superoxide dismutase [Mn], mitochondrial OS=Mus musculus GN=Sod2 PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 1.884e-54
Identity = 72/128 (56.25%), Postives = 89/128 (69.53%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NH+IFW NL+P  +GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  RL +   +NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   94 GHINHTIFWTNLSP--KGGGEPKGELLE-AIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217

HSP 2 Score: 87.0409 bits (214), Expect = 1.884e-54
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +T V LQ A+KFNG
Sbjct:   27 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNATEEKYHEALAKGDVTTQVALQPALKFNG 92
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_RAT (Superoxide dismutase [Mn], mitochondrial OS=Rattus norvegicus GN=Sod2 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.456e-54
Identity = 74/128 (57.81%), Postives = 88/128 (68.75%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHSIFW NL+P  +GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  RL +   +NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  S  Y
Sbjct:   94 GHINHSIFWTNLSP--KGGGEPKGELLE-AIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVSQRY 217

HSP 2 Score: 85.1149 bits (209), Expect = 2.456e-54
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            +LPDLPYDY ALEP I+ +IMQLHH KHH  YV N N   E+  +AL K D +T V LQ A+KFNG
Sbjct:   27 SLPDLPYDYGALEPHINAQIMQLHHSKHHATYVNNLNVTEEKYHEALAKGDVTTQVALQPALKFNG 92
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MACFA (Superoxide dismutase [Mn], mitochondrial OS=Macaca fascicularis GN=SOD2 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 9.247e-54
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   94 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217

HSP 2 Score: 85.8853 bits (211), Expect = 9.247e-54
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 2 
Query:   53 LATRKAIGLGKSVGLGLRGL---QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            + +R   G G+ +   L  L   Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNG
Sbjct:    1 MLSRAVCGTGRQLAPALGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNG 92
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MACNE (Superoxide dismutase [Mn], mitochondrial OS=Macaca nemestrina GN=SOD2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.205e-53
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   94 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKYKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACLNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217

HSP 2 Score: 85.8853 bits (211), Expect = 1.205e-53
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 2 
Query:   53 LATRKAIGLGKSVGLGLRGL---QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            + +R   G G+ +   L  L   Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNG
Sbjct:    1 MLSRAVCGTGRQLAPALGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNG 92
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_BOVIN (Superoxide dismutase [Mn], mitochondrial OS=Bos taurus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.670e-53
Identity = 72/128 (56.25%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS     +K++A    +QGSGW WLG + E  RL +   +NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  +  Y
Sbjct:   94 GHINHSIFWTNLSP--NGGGEPQGELLE-AIKRDFGSFAKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTARY 217

HSP 2 Score: 86.2705 bits (212), Expect = 2.670e-53
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 2 
Query:  113 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N A E+  +AL K D +  + LQ A+KFNG
Sbjct:   24 QKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVAEEKYREALEKGDVTAQIALQPALKFNG 92
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MACMU (Superoxide dismutase [Mn], mitochondrial OS=Macaca mulatta GN=SOD2 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 4.546e-53
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   70 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193

HSP 2 Score: 83.5741 bits (205), Expect = 4.546e-53
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNG
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNG 68
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MACFU (Superoxide dismutase [Mn], mitochondrial OS=Macaca fuscata fuscata GN=SOD2 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 4.546e-53
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   70 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193

HSP 2 Score: 83.5741 bits (205), Expect = 4.546e-53
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNG
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNG 68
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_PONPY (Superoxide dismutase [Mn], mitochondrial OS=Pongo pygmaeus GN=SOD2 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 1.005e-52
Identity = 71/128 (55.47%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   94 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217

HSP 2 Score: 83.9593 bits (206), Expect = 1.005e-52
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:  113 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNG
Sbjct:   24 QKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNG 92
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM2_MAIZE4.010e-8577.52Superoxide dismutase [Mn] 3.2, mitochondrial OS=Ze... [more]
SODM_DICDI1.478e-6060.16Superoxide dismutase [Mn], mitochondrial OS=Dictyo... [more]
SODM_MOUSE1.884e-5456.25Superoxide dismutase [Mn], mitochondrial OS=Mus mu... [more]
SODM_RAT2.456e-5457.81Superoxide dismutase [Mn], mitochondrial OS=Rattus... [more]
SODM_MACFA9.247e-5456.25Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACNE1.205e-5356.25Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_BOVIN2.670e-5356.25Superoxide dismutase [Mn], mitochondrial OS=Bos ta... [more]
SODM_MACMU4.546e-5356.25Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACFU4.546e-5356.25Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_PONPY1.005e-5255.47Superoxide dismutase [Mn], mitochondrial OS=Pongo ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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