CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:33..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_HUMAN (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.005e-52
Identity = 71/128 (55.47%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   94 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217

HSP 2 Score: 83.9593 bits (206), Expect = 1.005e-52
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:  113 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNG
Sbjct:   24 QKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNG 92
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM1_CAEEL (Superoxide dismutase [Mn] 1, mitochondrial OS=Caenorhabditis elegans GN=sod-2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.005e-52
Identity = 76/131 (58.02%), Postives = 92/131 (70.23%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH+NHSIFW NLA   + GGEP  + L  AI + FGSL+ L +++SA   A+QGSGW WLG   + K L V T ANQDPL  +A T LVPL GIDVWEHAYYLQYKNV+PDY+  IW + NWK  S+ + K
Sbjct:   94 GHINHSIFWTNLA---KDGGEPS-AELLTAIKSDFGSLDNLQKQLSASTVAVQGSGWGWLGYCPKGKILKVATCANQDPL--EATTGLVPLFGIDVWEHAYYLQYKNVRPDYVNAIWKIANWKNVSERFAK 218

HSP 2 Score: 85.8853 bits (211), Expect = 1.005e-52
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            +LPDLPYDY+ LEP IS EIMQLHHQKHH  YV N N+  E+L +A++K +    + LQ A+KFNG
Sbjct:   27 SLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGNVKEAIALQPALKFNG 92
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_PANTR (Superoxide dismutase [Mn], mitochondrial OS=Pan troglodytes GN=SOD2 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.313e-52
Identity = 71/128 (55.47%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   70 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193

HSP 2 Score: 83.5741 bits (205), Expect = 1.313e-52
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNG
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNG 68
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_HYLLA (Superoxide dismutase [Mn], mitochondrial OS=Hylobates lar GN=SOD2 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.313e-52
Identity = 71/128 (55.47%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   70 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTATSVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193

HSP 2 Score: 83.5741 bits (205), Expect = 1.313e-52
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNG
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNG 68
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_HORSE (Superoxide dismutase [Mn], mitochondrial OS=Equus caballus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.227e-52
Identity = 72/128 (56.25%), Postives = 88/128 (68.75%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NH+IFW NL+P   GGGEP    L  AI   FGS +   +K++A  A +QGSGW WLG + +  RL +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  S+ Y
Sbjct:   94 GHINHTIFWTNLSP--NGGGEPKGKLLD-AIKRDFGSFDKFKEKLTAVSAGVQGSGWGWLGFNKDQGRLQIVACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVSERY 217

HSP 2 Score: 80.8777 bits (198), Expect = 2.227e-52
Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 2 
Query:  113 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            Q  +LPDL YDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNG
Sbjct:   24 QKHSLPDLQYDYGALEPYINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNG 92
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_CEBAP (Superoxide dismutase [Mn], mitochondrial OS=Cebus apella GN=SOD2 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 2.231e-52
Identity = 70/128 (54.69%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS +   ++++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   70 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193

HSP 2 Score: 83.9593 bits (206), Expect = 2.231e-52
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNG
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNDTEEKYKEALAKGDVTAQIALQPALKFNG 68
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_CALJA (Superoxide dismutase [Mn], mitochondrial OS=Callithrix jacchus GN=SOD2 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 2.231e-52
Identity = 70/128 (54.69%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS +   ++++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   70 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193

HSP 2 Score: 83.9593 bits (206), Expect = 2.231e-52
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNG
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNDTEEKYKEALAKGDVTAQIALQPALKFNG 68
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_CHLMU (Superoxide dismutase [Mn] OS=Chlamydia muridarum GN=sodA PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 9.119e-51
Identity = 64/124 (51.61%), Postives = 89/124 (71.77%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 690
            GH+NHS+FW+ LAP ++GGG PP   L   I+  +GS +  ++   +  AA+QGSGW WL    + + L+++TTANQDPL  +A T ++PLLG+DVWEHAYYLQYKN + DYLKN  +++NW Y
Sbjct:   74 GHINHSLFWEMLAPQNKGGGTPPRHELLKLIEKFWGSFDNFLKNFISSSAAVQGSGWGWLAFCPKKQELMIQTTANQDPL--EATTGMIPLLGVDVWEHAYYLQYKNARLDYLKNFPSIINWDY 195

HSP 2 Score: 80.8777 bits (198), Expect = 9.119e-51
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            LPDLPYDY ALEP IS EIM LHHQKHHQ Y+ N N+A++ L  A    D + ++ +  A++FNG
Sbjct:    8 LPDLPYDYDALEPVISAEIMHLHHQKHHQGYINNLNEALKSLDVASATQDLTGLIAINPALRFNG 72
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_RABIT (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Oryctolagus cuniculus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.020e-50
Identity = 69/128 (53.91%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NH+IFW NL+P   GGGEP    L  AI   FGS +   ++++A    +QGSGW WLG + E   L +   ANQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+ W+  ++ Y
Sbjct:   75 GHINHTIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKERLTAVSVGVQGSGWGWLGFNKEQGHLQIAACANQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVITWENVTERY 198

HSP 2 Score: 79.337 bits (194), Expect = 2.020e-50
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            +LPDLPYDY ALEP I+ +IM+LHH KHH AYV N N   E+  +AL + D +  V LQ A+KF G
Sbjct:    8 SLPDLPYDYGALEPHINAQIMELHHSKHHAAYVNNLNATEEKYREALARGDVTAHVALQPALKFKG 73
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_CHLPN (Superoxide dismutase [Mn] OS=Chlamydia pneumoniae GN=sodA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 9.903e-50
Identity = 62/130 (47.69%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH+NHS+FW+ LAP+ +GGG+PP   L   I+  +G+++  ++K+    A +QGSGW WLG     + LV++ TANQDPL      L PLLG+DVWEHAYYLQYKNV+ DYLK    ++NW +  + + +
Sbjct:   74 GHINHSLFWETLAPIDQGGGQPPKHELLSLIERFWGTMDNFLKKLIEVAAGVQGSGWAWLGFCPAKQELVLQATANQDPLEPLTGKL-PLLGVDVWEHAYYLQYKNVRMDYLKAFPQIINWGHIENRFSE 202

HSP 2 Score: 79.337 bits (194), Expect = 9.903e-50
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            +LP+LPYDY ALEP IS EIM LHHQKHHQ Y+ N N A+++L  A  + + + ++ L+ A++FNG
Sbjct:    7 SLPELPYDYDALEPVISSEIMILHHQKHHQIYINNLNAALKRLDAAETQQNLNELIALEPALRFNG 72
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM_HUMAN1.005e-5255.47Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
SODM1_CAEEL1.005e-5258.02Superoxide dismutase [Mn] 1, mitochondrial OS=Caen... [more]
SODM_PANTR1.313e-5255.47Superoxide dismutase [Mn], mitochondrial OS=Pan tr... [more]
SODM_HYLLA1.313e-5255.47Superoxide dismutase [Mn], mitochondrial OS=Hyloba... [more]
SODM_HORSE2.227e-5256.25Superoxide dismutase [Mn], mitochondrial OS=Equus ... [more]
SODM_CEBAP2.231e-5254.69Superoxide dismutase [Mn], mitochondrial OS=Cebus ... [more]
SODM_CALJA2.231e-5254.69Superoxide dismutase [Mn], mitochondrial OS=Callit... [more]
SODM_CHLMU9.119e-5151.61Superoxide dismutase [Mn] OS=Chlamydia muridarum G... [more]
SODM_RABIT2.020e-5053.91Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_CHLPN9.903e-5047.69Superoxide dismutase [Mn] OS=Chlamydia pneumoniae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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