CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:33..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM2_CAEEL (Superoxide dismutase [Mn] 2, mitochondrial OS=Caenorhabditis elegans GN=sod-3 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.681e-49
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 699
            GH+NHSIFW NLA   + GGEP    +   I   FGSL+ L +++S    A+QGSGW WLG   + K L + T ANQDPL      +VPL GIDVWEHAYYLQYKNV+PDY+  IW + NWK  S+
Sbjct:   94 GHINHSIFWTNLA---KDGGEPSKELMD-TIKRDFGSLDNLQKRLSDITIAVQGSGWGWLGYCKKDKILKIATCANQDPL----EGMVPLFGIDVWEHAYYLQYKNVRPDYVHAIWKIANWKNISE 211          

HSP 2 Score: 85.5001 bits (210), Expect = 1.681e-49
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            TLPDLP+DY+ LEP IS EIMQLHHQKHH  YV N N+  E+L +A++K +    + LQ A+KFNG
Sbjct:   27 TLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQPALKFNG 92          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_CAVPO (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Cavia porcellus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 6.328e-49
Identity = 66/119 (55.46%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 678
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +   +NQDPL      L+PLLGIDVWEHAYYLQ KNV+PDYLK IW V+
Sbjct:   94 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAVSVGVQGSGWGWLGFNKERGCLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQLKNVRPDYLKAIWKVI 208          

HSP 2 Score: 86.2705 bits (212), Expect = 6.328e-49
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   95 LGLRGL-QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            LG+ G+ Q  +LPDLPYDY AL+P I+ EIMQLHH KHH AY+ N N A E+  +AL K D +  V LQ A+KFNG
Sbjct:   17 LGILGVRQKHSLPDLPYDYGALQPHINAEIMQLHHSKHHAAYLNNLNIAEEKYQEALAKGDVTAQVALQPALKFNG 92          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_CHLTR (Superoxide dismutase [Mn] OS=Chlamydia trachomatis GN=sodA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.330e-49
Identity = 63/123 (51.22%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  325 HVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 690
            H+NHS+FW+ LAP  +GGG PP   L   I+  +GS +  ++      AA+QGSGW WL    + + L+V+TTANQDPL  +A T ++PLLG+DVWEHAYYLQYKN + DYLK+  +++NW Y
Sbjct:   75 HINHSLFWEMLAPQGKGGGVPPRHELLKLIEKFWGSFDNFLKNFITSSAAVQGSGWGWLAFCPQKQELMVQTTANQDPL--EATTGMIPLLGVDVWEHAYYLQYKNARMDYLKSFPSIINWDY 195          

HSP 2 Score: 79.7221 bits (195), Expect = 6.330e-49
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            LP LPYDY ALEP IS EIMQLHHQKHHQ Y+ N N+A++ L  A    D + ++ +  A++FNG
Sbjct:    8 LPALPYDYDALEPVISAEIMQLHHQKHHQGYINNLNEALKSLDVANATQDLARLIAINPALRFNG 72          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_DROME (Superoxide dismutase [Mn], mitochondrial OS=Drosophila melanogaster GN=Sod2 PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.401e-48
Identity = 59/130 (45.38%), Postives = 83/130 (63.85%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH+NH+IFW+NL+P        P   L  AI++ + SLE   ++++    A+QGSGW WLG + +  +L +    NQDPL      L+PL GIDVWEHAYYLQYKNV+P Y++ IW++ NW   S  +Q+
Sbjct:   87 GHINHTIFWQNLSP----NKTQPSDDLKKAIESQWKSLEEFKKELTTLTVAVQGSGWGWLGFNKKSGKLQLAALPNQDPLEASTG-LIPLFGIDVWEHAYYLQYKNVRPSYVEAIWDIANWDDISCRFQE 211          

HSP 2 Score: 91.6633 bits (226), Expect = 1.401e-48
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 2
Query:   98 GLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            G+RG  T  LP LPYDY+ALEP I  EIM+LHHQKHHQ YV N N A EQL +A +K DT+ ++QL  A++FNG
Sbjct:   14 GVRGKHT--LPKLPYDYAALEPIICREIMELHHQKHHQTYVNNLNAAEEQLEEAKSKSDTTKLIQLAPALRFNG 85          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_SCHPO (Superoxide dismutase [Mn], mitochondrial OS=Schizosaccharomyces pombe GN=sod2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.948e-48
Identity = 69/129 (53.49%), Postives = 88/129 (68.22%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHS-SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHS+FWK LAP  EGGG+P  S SL  AI + +GSLE   ++M+A  A++QGSGW WL +D +   L + TTANQD +V   P    ++GID WEHAYY QY+N K +Y K IWNV+NWK A   Y
Sbjct:   92 GHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGWAWLIVDKDGS-LRITTTANQDTIVKSKP----IIGIDAWEHAYYPQYENRKAEYFKAIWNVINWKEAESRY 215          

HSP 2 Score: 77.7962 bits (190), Expect = 8.948e-48
Identity = 43/73 (58.90%), Postives = 49/73 (67.12%), Query Frame = 2
Query:  104 RGLQT-VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            RG+ T  TLP LPY Y+ALEPA+S  IM+LHH KHHQ YV N N A E+L  A   +D    V LQ AIKFNG
Sbjct:   20 RGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKL--ADPNLDLEGEVALQAAIKFNG 90          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_CANAL (Superoxide dismutase [Mn], mitochondrial OS=Candida albicans GN=SOD2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.648e-46
Identity = 67/127 (52.76%), Postives = 88/127 (69.29%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPH--SSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD-TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYA 693
            G++NH ++WKNLAPV +GGG+PP   S LG  I   FGSL+ LI+  + + A +QGSGW ++  +      + V TTANQD +    P LVPL+ ID WEHAYYLQY+NVK DY KN+W+V+NWK A
Sbjct:  104 GYLNHCLWWKNLAPVSQGGGQPPSEDSKLGKQIVKQFGSLDKLIEITNGKLAGIQGSGWAFIVKNKANGDTIDVITTANQDTVTD--PNLVPLIAIDAWEHAYYLQYQNVKADYFKNLWHVINWKEA 228          

HSP 2 Score: 73.1738 bits (178), Expect = 1.648e-46
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            +LP+L Y++SA EP ISG+I ++H+ KHHQ YV N N ++EQ  +A +K +   +V L+ AI FNG
Sbjct:   37 SLPELDYEFSATEPYISGQINEIHYTKHHQTYVNNLNASIEQAVEAKSKGEVKKLVALEKAINFNG 102          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_CHAFE (Superoxide dismutase [Mn], mitochondrial OS=Charybdis feriatus PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.149e-46
Identity = 64/114 (56.14%), Postives = 77/114 (67.54%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLK 660
            GH+NHSIFW+NL+     GGEP    L  AI+  FGS+E +  ++SA+  A+QGSGW WLG   E   L + T  NQDPL  +A T LVPL GIDVWEHAYYLQYKNV+   LK
Sbjct:   90 GHINHSIFWQNLSA---DGGEPEGELLA-AINRDFGSVENMKNQLSAQTVAVQGSGWGWLGYIAE-GALQIATCPNQDPL--EATTGLVPLFGIDVWEHAYYLQYKNVRRIMLK 196          

HSP 2 Score: 95.9005 bits (237), Expect = 2.149e-46
Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 2
Query:   83 KSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            +S+  GL   Q  TLPDLPYDY ALEP IS EIMQLHH KHHQ YV N N A E+L +A  K D ST++ L  A++FNG
Sbjct:   10 RSLRAGLWCRQKHTLPDLPYDYGALEPTISAEIMQLHHSKHHQTYVNNLNVAEEKLAEAKEKGDVSTIISLAPALRFNG 88          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_GANMI (Superoxide dismutase [Mn], mitochondrial OS=Ganoderma microsporum PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.806e-46
Identity = 67/128 (52.34%), Postives = 89/128 (69.53%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHE----GGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYA 693
            GH+NHS+FWKNLAP        GG      L  AI+ ++GS++  I++ +A  AA+QGSGW WLGL+   KRL + TTANQDPL++     VP++G+D+WEHA+YLQY NVK DYL  IW V+N+K A
Sbjct:   68 GHINHSLFWKNLAPAKSEGKGNGGALADGPLKSAIEQNWGSVDNFIKEFNATTAAIQGSGWGWLGLNPATKRLEITTTANQDPLLSH----VPIIGVDIWEHAFYLQYLNVKADYLAAIWIVINFKEA 191          

HSP 2 Score: 69.3218 bits (168), Expect = 2.806e-46
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT-STVVQLQGAIKFNG 319
            LPDLPY Y+ALEP IS +IM+LHH+KHHQ YV + N A     QA  K  T    + LQ A+KFNG
Sbjct:    5 LPDLPYAYNALEPFISQQIMELHHKKHHQTYVNSLNAAE----QAYAKASTPKERIALQSALKFNG 66          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_YEAST (Superoxide dismutase [Mn], mitochondrial OS=Saccharomyces cerevisiae GN=SOD2 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.291e-44
Identity = 67/126 (53.17%), Postives = 84/126 (66.67%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD-TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            G  NH +FW+NLAP  +GGGEPP  +L  AID  FGSL+ LI+  + + A +QGSGW ++  + +   +L V  T NQD   T    LVPL+ ID WEHAYYLQY+N K DY K IWNV+NWK AS
Sbjct:  103 GFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAGVQGSGWAFIVKNLSNGGKLDVVQTYNQD---TVTGPLVPLVAIDAWEHAYYLQYQNKKADYFKAIWNVVNWKEAS 225          

HSP 2 Score: 68.1662 bits (165), Expect = 3.291e-44
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:   56 ATRKAIGLGKSVGLGLRGLQT----VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKV--------DTSTVVQLQGAIKFNG 319
            A   A  L K  GL L         VTLPDL +D+ ALEP ISG+I +LH+ KHHQ YV  +N AV+Q FQ L+ +        +   ++ +Q  IKF+G
Sbjct:    3 AKTAAANLTKKGGLSLLSTTARRTKVTLPDLKWDFGALEPYISGQINELHYTKHHQTYVNGFNTAVDQ-FQELSDLLAKEPSPANARKMIAIQQNIKFHG 101          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_DEBHA (Probable superoxide dismutase [Mn], mitochondrial OS=Debaryomyces hansenii GN=DEHA2E01232g PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.615e-43
Identity = 65/128 (50.78%), Postives = 85/128 (66.41%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHS--SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFK-RLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            GH NH +FWK+LAP  + GG+ P S  +LG  I   +GS++ LI   +A+ A++QGSGW ++  + +    L V TT NQD   T    LVPL+ ID WEHAYYLQY+NVK DY K IWNV+NW+ AS
Sbjct:   80 GHTNHVLFWKSLAPNSQNGGKHPGSDTNLGKKIIEQYGSIDNLISITNAKLASIQGSGWAFIVKNKQNGGNLDVVTTYNQD---TVTDPLVPLIAIDAWEHAYYLQYQNVKADYFKAIWNVINWEEAS 204          

HSP 2 Score: 75.0998 bits (183), Expect = 1.615e-43
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  107 GLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            G   + LP L + Y +LEP ISG+I ++HH+KHHQ YV  YN A+EQL +A ++ D    + +Q  IKF+G
Sbjct:    8 GKNKIELPQLDWAYDSLEPYISGKINEIHHKKHHQTYVNGYNSAIEQLIEAESQGDVKKAIVIQQNIKFHG 78          
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM2_CAEEL1.681e-4953.97Superoxide dismutase [Mn] 2, mitochondrial OS=Caen... [more]
SODM_CAVPO6.328e-4955.46Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_CHLTR6.330e-4951.22Superoxide dismutase [Mn] OS=Chlamydia trachomatis... [more]
SODM_DROME1.401e-4845.38Superoxide dismutase [Mn], mitochondrial OS=Drosop... [more]
SODM_SCHPO8.948e-4853.49Superoxide dismutase [Mn], mitochondrial OS=Schizo... [more]
SODM_CANAL1.648e-4652.76Superoxide dismutase [Mn], mitochondrial OS=Candid... [more]
SODM_CHAFE2.149e-4656.14Superoxide dismutase [Mn], mitochondrial OS=Charyb... [more]
SODM_GANMI2.806e-4652.34Superoxide dismutase [Mn], mitochondrial OS=Ganode... [more]
SODM_YEAST3.291e-4453.17Superoxide dismutase [Mn], mitochondrial OS=Saccha... [more]
SODM_DEBHA1.615e-4350.78Probable superoxide dismutase [Mn], mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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