CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:33..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_NEUCR (Superoxide dismutase [Mn], mitochondrial OS=Neurospora crassa GN=sod-2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.644e-43
Identity = 61/133 (45.86%), Postives = 81/133 (60.90%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVH--EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDT--EFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH+NHS+FWKNLAP    E        SL   I+  +GS +   +  SA    +QGSGW WL  ++  E  RL + TT +QDP+V      VP+ G+D+WEHAYYLQY N K  Y++NIW V+NWK A + +Q
Sbjct:  102 GHINHSLFWKNLAPAETPETNYSKAAPSLAAEIEKTWGSFDEFKKAFSAALLGIQGSGWGWLVKESTAEKGRLRIITTKDQDPVVGGE---VPVFGVDMWEHAYYLQYLNGKAAYVENIWKVINWKTAEERFQ 231          

HSP 2 Score: 81.2629 bits (199), Expect = 4.644e-43
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 2
Query:  101 LRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            + GL T +LP LPY Y+ALEP IS +IM+LHH KHHQ YVTN N A++    A+   D    +  Q AIKFNG
Sbjct:   28 MAGLATYSLPQLPYAYNALEPYISAQIMELHHSKHHQTYVTNLNNALKVHVAAIASSDIPAQIAQQPAIKFNG 100          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_ASPFU (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus fumigatus GN=sodB PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.908e-43
Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSS-LGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHS+FWKNLAP   GGG+   +  L  AI+  +GS +      +     +QGSGW WL  D    +L + TT +QDP+   AP    + G+D+WEHAYYLQY N K  Y K IWNV+NW  A + Y
Sbjct:   73 GHINHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKDAFNTTLLGIQGSGWGWLVTDGPKGKLDITTTHDQDPVTGAAP----VFGVDMWEHAYYLQYLNDKASYAKGIWNVINWAEAENRY 197          

HSP 2 Score: 76.2554 bits (186), Expect = 7.908e-43
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  113 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            Q  TLP LPY Y AL+P IS +IM+LHH+KHHQ YV   N A+E   +A    D   +V +Q AIKFNG
Sbjct:    3 QQYTLPPLPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEANDVPKLVSVQQAIKFNG 71          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_PROFR (Superoxide dismutase [Mn/Fe] OS=Propionibacterium freudenreichii subsp. shermanii GN=sodA PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.344e-42
Identity = 58/121 (47.93%), Postives = 73/121 (60.33%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GHVNHS+FWKN+AP      E P   LG AID  FGS + +  + +A    +QGSGW  L  D   KR  + T    D         +PLL +D+WEHA+YLQYKNVK DY+K+ WNV+NW
Sbjct:   71 GHVNHSVFWKNMAP-KGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGWASLVWDPLGKR--INTLQFYDHQNNLPAGSIPLLQLDMWEHAFYLQYKNVKGDYVKSWWNVVNW 188          

HSP 2 Score: 81.6481 bits (200), Expect = 1.344e-42
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 2
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN 316
            TLP+LPYDYSALEP ISGEIM+LHH KHH+AYV   N A+++L +A +K D   + +L+  + FN
Sbjct:    4 TLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTALDKLAEARDKADFGAINKLEKDLAFN 68          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_TETPY (Superoxide dismutase [Fe] OS=Tetrahymena pyriformis PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.283e-42
Identity = 65/130 (50.00%), Postives = 81/130 (62.31%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPP--HSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GHVNH I+W NLAPV  GGG  P  HS L  AI   +GS E  I   +   AA+QGSGW WLG DT  K L +    NQD  + +  ++VPLL IDVWEHAYYL Y+N++P YL  +W ++NW+     Y
Sbjct:   64 GHVNHWIYWDNLAPVKSGGGVLPDEHSPLTKAIKEKWGSYENFITLFNTRTAAIQGSGWGWLGYDTVSKSLRLFELGNQD--MPEWSSIVPLLTIDVWEHAYYLDYQNLRPKYLTEVWKIVNWREVEKRY 191          

HSP 2 Score: 64.3142 bits (155), Expect = 2.283e-42
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 2
Query:  134 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN 316
            L Y+YS LEP +S  ++  HH KHHQAYV N N   EQ+  A  + D   +  LQ A++FN
Sbjct:    1 LNYEYSDLEPVLSAHLLSFHHGKHHQAYVNNLNATYEQIAAATKENDAHKIATLQSALRFN 61          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_GLOMM (Superoxide dismutase [Mn], mitochondrial OS=Glossina morsitans morsitans GN=Sod2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.042e-42
Identity = 58/128 (45.31%), Postives = 77/128 (60.16%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHSI+W+NL+P        P + L  AI+  F S E   + +SA    +QGSGW WLG + + K+L +   +NQ+PL      LVPL  IDVWEHAYYLQ KN    Y++  W++ NWK  SD Y
Sbjct:   88 GHLNHSIYWQNLSPTKS----EPSADLKKAIEEQFSSFEQFKKDLSALSIGVQGSGWGWLGYNKKXKKLQILAVSNQEPLQA-VTGLVPLFAIDVWEHAYYLQXKNXXAKYVEAXWDIANWKBISDRY 210          

HSP 2 Score: 74.7146 bits (182), Expect = 5.042e-42
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2
Query:   77 LGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN 316
            L +++   +RG  T  LP LPYDY AL P IS +I+++HH KHHQ YV N N   EQ+ +A +K D + VV+L     FN
Sbjct:    8 LSRTIKAAVRGKHT--LPKLPYDYGALAPIISKDILEVHHGKHHQTYVNNLNAVEEQMTEAHSKKDVNKVVELSKNYAFN 85          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_PENCH (Superoxide dismutase [Mn], mitochondrial OS=Penicillium chrysogenum GN=SOD PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.193e-41
Identity = 61/133 (45.86%), Postives = 81/133 (60.90%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAP----VHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFK-RLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHS+FWKNL P     ++  G P   +L  AI + +GS EA ++   AE   LQGSGW WL      K RL + TT +QDP+   AP  VP+ G+D+WEHAYYLQY N K  Y++ IW +++W  A   Y
Sbjct:   74 GHINHSLFWKNLTPPGTPANDIAGAP---ALREAIVSRWGSHEAFVKAFGAELLGLQGSGWGWLVSKGGAKGRLEIVTTKDQDPV--NAPD-VPVFGVDMWEHAYYLQYLNNKAGYVEGIWKIIHWAEAEKRY 200          

HSP 2 Score: 79.7221 bits (195), Expect = 4.193e-41
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  113 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            QT TLP LPY Y ALEP IS +IM+LHHQKHHQ Y+ N N A+     A    D  T++ LQ  ++FNG
Sbjct:    4 QTHTLPPLPYAYDALEPVISKQIMELHHQKHHQTYINNLNAALSAQASATASNDVPTLISLQQKLRFNG 72          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODB_ASPNG (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus niger GN=sodB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.463e-41
Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHS--SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHS+FWKNLA           S  SL  AI+  +GS++       A    +QGSGW WL    +   L + TT +QDP+       +P+ G+D+WEHAYYLQY N K  Y++NIW V+NW+ A   Y
Sbjct:   73 GHINHSLFWKNLARYDSPATNLERSAPSLKDAIEKQWGSVKNFTDAFEAVLLGIQGSGWGWLVSSGKTGFLEIVTTKDQDPVTGP----IPVFGVDMWEHAYYLQYLNNKASYVQNIWKVINWEEAEHRY 198          

HSP 2 Score: 82.8037 bits (203), Expect = 5.463e-41
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            TLPDLPYDY ALEP IS +IM+LHH+KHHQ YV N N A+     AL+  D + ++ +Q  +KFNG
Sbjct:    6 TLPDLPYDYDALEPIISKQIMELHHKKHHQTYVNNLNAALASQASALDSNDITQLISIQQKLKFNG 71          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_ASPOR (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus oryzae GN=sodB PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.118e-41
Identity = 57/131 (43.51%), Postives = 79/131 (60.31%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAP--VHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH+NHS+FWKNLAP    E   +     L  AI+  +GS+E   +   A    LQGSGW WL  +    +L + +T +QDP+  K    VP+ G+D+WEHAYYLQY N K  Y++ IW V+NW+ A D ++
Sbjct:   73 GHINHSLFWKNLAPHASPETNIDQAAPVLKAAIEAQYGSVEKFKEAFGATLLGLQGSGWGWLVANGPGGKLEIVSTKDQDPVTDK----VPVFGVDMWEHAYYLQYFNNKASYVEGIWKVLNWRTAEDRFK 199          

HSP 2 Score: 74.7146 bits (182), Expect = 7.118e-41
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  116 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            T +LP LPY Y ALEP I  +IM++HHQKHHQ Y+TN N A+     AL   +   ++ LQ  IKFNG
Sbjct:    4 TFSLPPLPYAYDALEPVICKQIMEIHHQKHHQTYITNLNAALSAQSTALAANNIPQLINLQQKIKFNG 71          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCFO (Superoxide dismutase [Mn] OS=Mycobacterium fortuitum GN=sodA PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.674e-40
Identity = 61/128 (47.66%), Postives = 79/128 (61.72%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW+   + Y
Sbjct:   72 GHVNHSIWWKNLSP---NGGDKPTGDLAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGDRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNWEDVQNRY 194          

HSP 2 Score: 65.0846 bits (157), Expect = 2.674e-40
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 2
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTV 286
            TLPDL YDY ALEP ISG+I +LHH KHH AYV   N AV +L +A    D + +
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHAAYVKGVNDAVAKLDEARANGDHAAI 59          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCLE (Superoxide dismutase [Mn] OS=Mycobacterium leprae GN=sodA PE=3 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 4.539e-40
Identity = 60/121 (49.59%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GHVNHSI+WKNL+P    GG+ P   L   ID  FGS +    + SA    LQGSGW  LG DT   +L+     +Q   V+    ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   72 GHVNHSIWWKNLSP---NGGDKPTGGLATDIDETFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGNKLLTFQLYDQQANVSLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          

HSP 2 Score: 65.4698 bits (158), Expect = 4.539e-40
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 2
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTV 286
            TLPDL +DY+ALEP ISGEI ++HH KHH AYV   N A+ +L +A  K D S +
Sbjct:    5 TLPDLDWDYAALEPHISGEINEIHHTKHHAAYVKGVNDALAKLDEARAKDDHSAI 59          
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM_NEUCR4.644e-4345.86Superoxide dismutase [Mn], mitochondrial OS=Neuros... [more]
SODM_ASPFU7.908e-4345.74Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_PROFR1.344e-4247.93Superoxide dismutase [Mn/Fe] OS=Propionibacterium ... [more]
SODF_TETPY2.283e-4250.00Superoxide dismutase [Fe] OS=Tetrahymena pyriformi... [more]
SODM_GLOMM5.042e-4245.31Superoxide dismutase [Mn], mitochondrial OS=Glossi... [more]
SODM_PENCH4.193e-4145.86Superoxide dismutase [Mn], mitochondrial OS=Penici... [more]
SODB_ASPNG5.463e-4142.31Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_ASPOR7.118e-4143.51Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_MYCFO2.674e-4047.66Superoxide dismutase [Mn] OS=Mycobacterium fortuit... [more]
SODM_MYCLE4.539e-4049.59Superoxide dismutase [Mn] OS=Mycobacterium leprae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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