CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:33..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_CORDI (Superoxide dismutase [Mn] OS=Corynebacterium diphtheriae GN=sodA PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 7.713e-40
Identity = 65/121 (53.72%), Postives = 76/121 (62.81%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GH NHSIFWKNL+P   GGGEP   +L  AI   FGS E      SA    LQGSGW  LG D    RLV+E   +Q   ++    L PLL +D+WEHA+YLQYKNVK DY+K +WNV NW
Sbjct:   72 GHTNHSIFWKNLSP--NGGGEPT-GALAEAIAKEFGSFEKFKDHFSAAALGLQGSGWAVLGYDHIGGRLVIEQLTDQQGNISA--NLTPLLMLDMWEHAFYLQYKNVKADYVKAVWNVFNW 187

HSP 2 Score: 60.077 bits (144), Expect = 7.713e-40
Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 2 
Query:  116 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV 289
            T  LP+L Y Y ALEP I+ EIM+LHH KHH  YV   N A+E+L +A    +   VV
Sbjct:    2 TYALPELDYAYDALEPHIAAEIMELHHSKHHANYVNGANAALEKLQKARENGEIGAVV 59
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.221e-39
Identity = 62/130 (47.69%), Postives = 83/130 (63.85%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH+NHS+FW+ L P   GG + P   L  AID  FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+N + DYL+ IWNV+NW  A + ++K
Sbjct:   80 GHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEFFKK 203

HSP 2 Score: 61.6178 bits (148), Expect = 2.221e-39
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ--------LQGAIKFNG 319
            LPDL Y Y ALEP I  + M++HHQKHH AYVTN N A+E+ +  L+ V+   +++        +Q A++ NG
Sbjct:    7 LPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEK-YPYLHGVEVEVLLRHLAALPQDIQTAVRNNG 78
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.221e-39
Identity = 62/130 (47.69%), Postives = 83/130 (63.85%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH+NHS+FW+ L P   GG + P   L  AID  FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+N + DYL+ IWNV+NW  A + ++K
Sbjct:   80 GHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEFFKK 203

HSP 2 Score: 61.6178 bits (148), Expect = 2.221e-39
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ--------LQGAIKFNG 319
            LPDL Y Y ALEP I  + M++HHQKHH AYVTN N A+E+ +  L+ V+   +++        +Q A++ NG
Sbjct:    7 LPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEK-YPYLHGVEVEVLLRHLAALPQDIQTAVRNNG 78
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCPA (Superoxide dismutase [Mn] OS=Mycobacterium paratuberculosis GN=sodA PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 3.770e-39
Identity = 62/121 (51.24%), Postives = 76/121 (62.81%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + SA    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   72 GHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTVGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187

HSP 2 Score: 60.077 bits (144), Expect = 3.770e-39
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTV 286
            TLPDL +DY+ALEP ISG+I ++HH KHH  YV   N A+ +L +A    D + +
Sbjct:    5 TLPDLDWDYAALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAI 59
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCSM (Superoxide dismutase [Mn] OS=Mycobacterium smegmatis GN=sodA PE=1 SV=4)

HSP 1 Score: 119.783 bits (299), Expect = 3.770e-39
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GH+NHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   72 GHINHSIWWKNLSP---NGGDKPTGELAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGGRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187

HSP 2 Score: 63.1586 bits (152), Expect = 3.770e-39
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTV 286
            TLPDL YDY ALEP ISG+I +LHH KHH  YV   N A+ +L +A    D + +
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHATYVKGVNDAIAKLEEARANGDHAAI 59
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCS2 (Superoxide dismutase [Mn] OS=Mycobacterium smegmatis GN=sodA PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.770e-39
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GH+NHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   72 GHINHSIWWKNLSP---NGGDKPTGELAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGGRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187

HSP 2 Score: 63.1586 bits (152), Expect = 3.770e-39
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTV 286
            TLPDL YDY ALEP ISG+I +LHH KHH  YV   N A+ +L +A    D + +
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHATYVKGVNDAIAKLEEARANGDHAAI 59
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_THEAQ (Superoxide dismutase [Mn] OS=Thermus aquaticus GN=sodA PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.771e-39
Identity = 62/129 (48.06%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH+NHS+FW+ L P   GG + P   L  AID  FG   AL +K++       GSGW WL  D  F +L V +TANQD  V       P++GIDVWEHAYYL+Y+N + DYL+ IWNV+NW  A ++Y+
Sbjct:   80 GHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFAALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVISTANQDNPVMGG--FAPIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEIYK 202

HSP 2 Score: 60.4622 bits (145), Expect = 3.771e-39
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 2 
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-------FQALNKVDTSTVVQLQGAIKFNG 319
            LP+L Y Y ALEP I    M++HHQKHH AYVTN N A+E+         + L +  T+    +Q A++ NG
Sbjct:    7 LPELGYPYEALEPHIDARTMEIHHQKHHGAYVTNLNAALEKYPYLQGAEVETLLRHLTALPADIQAAVRNNG 78
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCAV (Superoxide dismutase [Mn] OS=Mycobacterium avium GN=sodA PE=3 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 4.911e-39
Identity = 62/121 (51.24%), Postives = 76/121 (62.81%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + SA    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   72 GHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187

HSP 2 Score: 60.077 bits (144), Expect = 4.911e-39
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTV 286
            TLPDL +DY+ALEP ISG+I ++HH KHH  YV   N A+ +L +A    D + +
Sbjct:    5 TLPDLDWDYAALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAI 59
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_AGABI (Superoxide dismutase [Mn], mitochondrial OS=Agaricus bisporus GN=sod PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.403e-39
Identity = 65/128 (50.78%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHS+FW+NLAP    GG+     L  AID  FG L+ L ++ +   A +QGSGW WLG++   KRL + TT NQDPL+     LVP++G+D+WEHA+YLQY NVK DYL  IW+V+N+  A   Y
Sbjct:   68 GHINHSLFWQNLAPAAGAGGQLKPGPLKDAIDQTFGGLDNLKKEFNTTTAGIQGSGWGWLGVNPSNKRLEISTTPNQDPLL----NLVPIIGVDIWEHAFYLQYLNVKADYLNAIWSVINFDEAQRRY 191

HSP 2 Score: 44.2838 bits (103), Expect = 6.403e-39
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 2 
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQK 202
            LPDLPY Y ALEP IS +IM+LHH+K
Sbjct:    5 LPDLPYAYDALEPYISRQIMELHHKK 30
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCLP (Superoxide dismutase [Mn] OS=Mycobacterium lepraemurium GN=sodA PE=3 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 1.086e-38
Identity = 61/121 (50.41%), Postives = 76/121 (62.81%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GHVNHS++WKNL+P    GG+ P   L  AID  FGS +    + SA    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   72 GHVNHSLWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187

HSP 2 Score: 59.6918 bits (143), Expect = 1.086e-38
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTV 286
            TLPDL +DY ALEP ISG+I ++HH KHH  YV   N A+ +L +A    D + +
Sbjct:    5 TLPDLDWDYEALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAI 59
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM_CORDI7.713e-4053.72Superoxide dismutase [Mn] OS=Corynebacterium dipht... [more]
SODM_THET82.221e-3947.69Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET22.221e-3947.69Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_MYCPA3.770e-3951.24Superoxide dismutase [Mn] OS=Mycobacterium paratub... [more]
SODM_MYCSM3.770e-3948.76Superoxide dismutase [Mn] OS=Mycobacterium smegmat... [more]
SODM_MYCS23.770e-3948.76Superoxide dismutase [Mn] OS=Mycobacterium smegmat... [more]
SODM_THEAQ3.771e-3948.06Superoxide dismutase [Mn] OS=Thermus aquaticus GN=... [more]
SODM_MYCAV4.911e-3951.24Superoxide dismutase [Mn] OS=Mycobacterium avium G... [more]
SODM_AGABI6.403e-3950.78Superoxide dismutase [Mn], mitochondrial OS=Agaric... [more]
SODM_MYCLP1.086e-3850.41Superoxide dismutase [Mn] OS=Mycobacterium lepraem... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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