CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:33..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRPN (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae GN=sodA PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.206e-36
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY++Y+NV+PDY+K  ++V+NW    ++Y
Sbjct:   77 GHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYRNVRPDYIKAFFSVINWNKVDELY 197

HSP 2 Score: 60.8474 bits (146), Expect = 6.206e-36
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 2 
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            + LP+LPY Y ALEP I  E M LHH KHHQ YV N N A+E+
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEK 45
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.051e-35
Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH NHS+FWK+L       G     +L  AI+  FGS++A   +     A   GSGW WL L  E K  VV T    +PL+ K        PLLG+DVWEHAYYL+++N +PDY+K  WNV+NW + ++ +++
Sbjct:   79 GHTNHSLFWKSLKK-----GTTLQGALKDAIERDFGSVDAFKAEFEKAAATRFGSGWAWLVLTAEGKLAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDFVAERFEQ 206

HSP 2 Score: 58.151 bits (139), Expect = 1.051e-35
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 250
            TLP+L Y Y+ALEP    + M++HH KHHQAYV N N A+E L
Sbjct:    4 TLPELGYAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGL 46
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.784e-35
Identity = 56/133 (42.11%), Postives = 83/133 (62.41%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTL---VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH NHS FWK +       G  P+  +  AI+  FGS++ +  K +A  A   GSGW WL +  +   L +++T NQD PL+T  P +   +PLLG+DVWEHAYYL+Y+N +P+Y+   WNV+NW+  ++ Y+
Sbjct:   80 GHYNHSFFWKVMTNPSNTNG--PNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWAWLSVKPDGS-LSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAWWNVVNWEQVAENYK 209

HSP 2 Score: 56.9954 bits (136), Expect = 1.784e-35
Identity = 30/79 (37.97%), Postives = 41/79 (51.90%), Query Frame = 2 
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQA-------LNKV--------DTSTVVQLQGAIKFN 316
            LP LPYDY +LEP +    M +HH KHHQ YV N N A+++  +        LNK         D +TV++  G   +N
Sbjct:    5 LPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDLNKAVGTDKLPKDVATVIRNNGGGHYN 83
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 1.785e-35
Identity = 60/133 (45.11%), Postives = 77/133 (57.89%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVH-EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH NHS+FW+ +     + G   P   L  AI++ FGS +A  QK         GSGW WL +     +L V +TANQD PL+ +A   V   P+LG+DVWEHAYYL Y+N +PDYL   WNV+NW   S  Y
Sbjct:   77 GHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDG--KLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEVSKRY 207

HSP 2 Score: 63.1586 bits (152), Expect = 1.785e-35
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFN 316
            TLP LPY Y ALEP I    M++HH KHHQ YV N NKA          VEQL Q L++V        +GA++ N
Sbjct:    4 TLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADK----KGALRNN 74
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.033e-35
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHS+FW+ L+P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+  +++Y
Sbjct:   77 GHLNHSLFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYINAFWNVVNWEKVNELY 195

HSP 2 Score: 56.9954 bits (136), Expect = 3.033e-35
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP+LPY Y ALEP I  + M++HH KHH  YVT  N AVE
Sbjct:    5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVE 44
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.033e-35
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHS+FW+ L+P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+  +++Y
Sbjct:   77 GHLNHSLFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYINAFWNVVNWEKVNELY 195

HSP 2 Score: 56.9954 bits (136), Expect = 3.033e-35
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP+LPY Y ALEP I  + M++HH KHH  YVT  N AVE
Sbjct:    5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVE 44
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.947e-35
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH+NHS FW  L P  +G        +G AI   FGS E    +  A      GSGW WL +D E  +L V +TANQD  +++   L P+LG+DVWEHAYYL+Y NV+PDY++  +N++NW   +++Y K
Sbjct:   78 GHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVVD-EAGKLKVVSTANQDNPISEG--LTPVLGLDVWEHAYYLKYHNVRPDYIEAFFNLVNWDKVNELYAK 204

HSP 2 Score: 54.6842 bits (130), Expect = 3.947e-35
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            TLP+LPY  +ALEP      M+LHH KHHQ YV N N A+E+
Sbjct:    4 TLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEK 45
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.947e-35
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH+NHS FW  L P  +G        +G AI   FGS E    +  A      GSGW WL +D E  +L V +TANQD  +++   L P+LG+DVWEHAYYL+Y NV+PDY++  +N++NW   +++Y K
Sbjct:   78 GHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVVD-EAGKLKVVSTANQDNPISEG--LTPVLGLDVWEHAYYLKYHNVRPDYIEAFFNLVNWDKVNELYAK 204

HSP 2 Score: 54.6842 bits (130), Expect = 3.947e-35
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            TLP+LPY  +ALEP      M+LHH KHHQ YV N N A+E+
Sbjct:    4 TLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEK 45
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.950e-35
Identity = 53/121 (43.80%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GH NH++FW +L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  +++  T  P+LG+DVWEHAYYL+++N +P+Y+   WNV+NW
Sbjct:   78 GHANHTLFWSSLSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNNG--KLEIVSTANQDSPLSEGKT--PVLGLDVWEHAYYLKFQNRRPEYIDTFWNVINW 191

HSP 2 Score: 54.299 bits (129), Expect = 3.950e-35
Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 2 
Query:  116 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV-------QLQGAIKFNG 319
            T  LP LPY Y ALEP    E M++H+ KHH  YVT  N+AV    +  +K     V        +++GA++ +G
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMEIHYTKHHNIYVTKLNEAVSGHAELASKPGEELVANLDSVPEEIRGAVRNHG 76
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRP3 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M3 GN=sodA PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 6.701e-35
Identity = 53/129 (41.09%), Postives = 83/129 (64.34%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH+NH++FW+ L+P  +       S +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S++YQ
Sbjct:   77 GHLNHALFWELLSPEKQD----VTSDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIINWKKVSELYQ 198

HSP 2 Score: 56.9954 bits (136), Expect = 6.701e-35
Identity = 24/43 (55.81%), Postives = 28/43 (65.12%), Query Frame = 2 
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEK 45
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM_STRPN6.206e-3642.19Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_HAEIN1.051e-3542.11Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM_CHLRE1.784e-3542.11Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODM_DEIRA1.785e-3545.11Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM_STAES3.033e-3542.97Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ3.033e-3542.97Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_LACLM3.947e-3543.85Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LACLA3.947e-3543.85Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LISIV3.950e-3543.80Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM_STRP36.701e-3541.09Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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