CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:33..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_PASMU (Superoxide dismutase [Mn] OS=Pasteurella multocida GN=sodA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.718e-35
Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH+NHS+FWK+L       G     +L  AI   FGS+EA   +     A   GSGW WL L  E  +L V +TANQD P++ KA       PLLG+DVWEHAYYL+++N +PDY+K  W+V+NW + ++ ++K
Sbjct:   78 GHLNHSLFWKSLKK-----GTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLVLQ-ENGKLAVVSTANQDSPVMGKAIAGCEGYPLLGLDVWEHAYYLKFQNRRPDYIKEFWHVVNWDFVAERFEK 205          

HSP 2 Score: 56.9954 bits (136), Expect = 8.718e-35
Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 2
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 250
            TLP+L Y Y ALEP      M++HH KHHQAYV N N A+E L
Sbjct:    4 TLPELGYAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENL 46          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_BACST (Superoxide dismutase [Mn] OS=Bacillus stearothermophilus GN=sodA PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 8.726e-35
Identity = 57/130 (43.85%), Postives = 77/130 (59.23%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH NHS+FW  L+P   GGGEP    L  AI+  FGS  A   + S   A   GSGW WL ++     L + +T NQD  + +  T  P+LG+DVWEHAYYL+Y+N +P+Y+   WNV+NW   +  Y +
Sbjct:   78 GHANHSLFWTILSP--NGGGEPT-GELADAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVNNG--ELEITSTPNQDSPIMEGKT--PILGLDVWEHAYYLKYQNRRPEYIAAFWNVVNWDEVAKRYSE 200          

HSP 2 Score: 56.9954 bits (136), Expect = 8.726e-35
Identity = 25/40 (62.50%), Postives = 27/40 (67.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP LPY Y ALEP I  E M +HH KHH  YVTN N A+E
Sbjct:    5 LPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALE 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 8.726e-35
Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH NHS+FW  L+P   GGGEP    L  AI+  FGS  A   + S   A   GSGW WL ++     L + +T NQD  + +  T  P+LG+DVWEHAYYL+Y+N +P+Y+   WN++NW   +  Y +
Sbjct:   78 GHANHSLFWTILSP--NGGGEPT-GELAEAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVNNG--ELEITSTPNQDSPIMEGKT--PILGLDVWEHAYYLKYQNRRPEYIAAFWNIVNWDEVAKRYSE 200          

HSP 2 Score: 56.9954 bits (136), Expect = 8.726e-35
Identity = 25/40 (62.50%), Postives = 27/40 (67.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP LPY Y ALEP I  E M +HH KHH  YVTN N A+E
Sbjct:    5 LPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALE 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.481e-34
Identity = 54/129 (41.86%), Postives = 78/129 (60.47%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH+NHS+FW+ L P  E  G          I   +GSL+    + + + A   GSGW WL +D + K L + +T NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW    ++Y+
Sbjct:   77 GHLNHSLFWQLLTPNSEEKGTVIDK-----IKEEWGSLDKFKDEFAKKAAGQFGSGWAWLVVDKDGK-LEIVSTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYIDAFWNVVNWNKVDELYE 197          

HSP 2 Score: 57.3806 bits (137), Expect = 1.481e-34
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP+LPY++ ALEP I  E M++HH KHH  YVT  N A+E
Sbjct:    5 LPNLPYEFDALEPYIDKETMEIHHDKHHNTYVTKLNAAIE 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_LISMO (Superoxide dismutase [Mn] OS=Listeria monocytogenes GN=sodA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.929e-34
Identity = 54/125 (43.20%), Postives = 82/125 (65.60%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            GH NH++FW  L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  ++   T  P+LG+DVWEHAYYL+++N +P+Y++  WNV+NW  A+
Sbjct:   78 GHANHTLFWSILSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNDG--KLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYYLKFQNRRPEYIETFWNVINWDEAN 195          

HSP 2 Score: 53.1434 bits (126), Expect = 1.929e-34
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 2
Query:  116 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV 241
            T  LP LPY Y ALEP    E M++H+ KHH  YVT  N+AV
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAV 43          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRP8 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M18 GN=sodA PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.929e-34
Identity = 52/129 (40.31%), Postives = 82/129 (63.57%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH+NH++FW+ L+P  +         +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S++YQ
Sbjct:   77 GHLNHALFWELLSPEKQD----VTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIINWKKVSELYQ 198          

HSP 2 Score: 57.3806 bits (137), Expect = 1.929e-34
Identity = 24/43 (55.81%), Postives = 28/43 (65.12%), Query Frame = 2
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+
Sbjct:    3 IILPELPYAYDALEPQFDAETMSLHHDKHHATYVANTNAALEK 45          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.508e-34
Identity = 58/130 (44.62%), Postives = 80/130 (61.54%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH NH+ FW  L+P   GGG+P    L  AI+  FGS +A  ++ +  GA   GSGW WL ++     L V +T NQD  +T+  T  P++G+DVWEHAYYL Y+N +PDY+   WNV++W  A   YQ+
Sbjct:   94 GHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNG--ELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQE 216          

HSP 2 Score: 51.2174 bits (121), Expect = 2.508e-34
Identity = 28/72 (38.89%), Postives = 38/72 (52.78%), Query Frame = 2
Query:  137 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            PY Y ALEP    E M +HH KHH  Y+TN N           K+VE+L   LN+V  +    ++ A++ NG
Sbjct:   25 PYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNG 92          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.513e-34
Identity = 54/125 (43.20%), Postives = 80/125 (64.00%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            GH NH++FW  L+P    GG  P   L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  ++   T  P+LG+DVWEHAYYL+++N +P+Y+   WNV+NW  A+
Sbjct:   78 GHANHTLFWSILSP---NGGGAPTGDLKSAIESEFGTFDDFKEKFNAAAAARFGSGWAWLVVNNG--KLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYYLKFQNRRPEYIDTFWNVVNWDEAN 195          

HSP 2 Score: 53.9138 bits (128), Expect = 2.513e-34
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 2
Query:  116 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV 241
            T  LP LPY Y ALEP    E M+LH+ KHH  YVT  N+AV
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMELHYTKHHNTYVTKLNEAV 43          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRP1 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M1 GN=sodA PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.513e-34
Identity = 52/129 (40.31%), Postives = 82/129 (63.57%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH+NH++FW+ L+P  +         +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S++YQ
Sbjct:   77 GHLNHALFWELLSPEKQD----VTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIVNWKKVSELYQ 198          

HSP 2 Score: 56.9954 bits (136), Expect = 2.513e-34
Identity = 24/43 (55.81%), Postives = 28/43 (65.12%), Query Frame = 2
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEK 45          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRP6 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M6 GN=sodA PE=3 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 3.273e-34
Identity = 52/129 (40.31%), Postives = 82/129 (63.57%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH+NH++FW+ L+P  +         +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S++YQ
Sbjct:   77 GHLNHALFWELLSPEKQD----ITPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIINWKKVSELYQ 198          

HSP 2 Score: 56.9954 bits (136), Expect = 3.273e-34
Identity = 24/43 (55.81%), Postives = 28/43 (65.12%), Query Frame = 2
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANANAALEK 45          
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM_PASMU8.718e-3544.78Superoxide dismutase [Mn] OS=Pasteurella multocida... [more]
SODM_BACST8.726e-3543.85Superoxide dismutase [Mn] OS=Bacillus stearothermo... [more]
SODM_BACCA8.726e-3543.08Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODM_STACA1.481e-3441.86Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]
SODM_LISMO1.929e-3443.20Superoxide dismutase [Mn] OS=Listeria monocytogene... [more]
SODM_STRP81.929e-3440.31Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM1_BACCR2.508e-3444.62Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM_LISIN2.513e-3443.20Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]
SODM_STRP12.513e-3440.31Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRP63.273e-3440.31Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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