CN185693

Overview
NameCN185693
Unique NameCN185693
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185693_ssr26 microsatellite CN185693_ssr26:26..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2499 contig Csv1_Contig2499:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185693 vs. ExPASy Swiss-Prot
Match: PKSC_BACSU (Polyketide biosynthesis malonyl CoA-acyl carrier protein transacylase pksC OS=Bacillus subtilis GN=pksC PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 2
Query:  287 FLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGKAMQEAADAAKGAMVSIIGLD 700
            ++FPGQG+Q  GMG          EL  +A++ILG+ +  +C   P   L+ T  +QPA+YV + A   L + RD  +++    D   G SLGEY AL  A AF FE GL+LV+ RG+ M   ++   G M +++GL+
Sbjct:    4 YVFPGQGSQKQGMGSGL--FDEFKELTDQADEILGYSIKRLCLENPYSNLNKTQFTQPALYVVN-ALSYLKKIRD--EEV--KPDFVAGHSLGEYNALFAAEAFDFETGLQLVRKRGELMSLISN---GGMAAVMGLN 131          
BLAST of CN185693 vs. ExPASy Swiss-Prot
Match: PKSE_BACSU (Polyketide biosynthesis protein pksE OS=Bacillus subtilis GN=pksE PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 54/137 (39.42%), Postives = 76/137 (55.47%), Query Frame = 2
Query:  287 FLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGKAMQEAADAAKGAMVSIIGL 697
            ++FPGQG+Q  GMG+          L  +A+ ILG+ + ++CT      ++ T  +QPA+YV + A   L R  + G++     D   G SLGEY AL  AGAF FE GL+LVK RG+ M        G M ++IGL
Sbjct:    4 YVFPGQGSQQKGMGQGL--FEQYQHLTDQADQILGYSIEKLCTEKSYLDVNHTEYTQPALYVVN-ALSYLKRVEETGRK----PDFAAGHSLGEYNALMAAGAFDFETGLRLVKKRGELMGRITG---GGMAAVIGL 130          
BLAST of CN185693 vs. ExPASy Swiss-Prot
Match: FABD_BUCAP (Malonyl CoA-acyl carrier protein transacylase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=fabD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 51/141 (36.17%), Postives = 77/141 (54.61%), Query Frame = 2
Query:  284 AFLFPGQGAQAVGMGKE--AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGKAMQEAADAAKGAMVSIIGLD 700
            A LFPGQG+Q   M      +      +++ +A++ + ++LL +  NG K+K D     Q AI  +S+A  +L + ++G +  + S     G SLGEY+AL  A A  F D LK+VKLR K MQ+        + +IIGLD
Sbjct:    5 AMLFPGQGSQYKNMLSSFFQKKNNLFKKIFDEASEYVNYNLLNLIKNGAKKKRDDYKYIQSAILTSSIAIYQLWKEKNGRRPALMS-----GHSLGEYSALVCANAIKFSDALKIVKLRSKLMQKIIINKPSLVQAIIGLD 140          
BLAST of CN185693 vs. ExPASy Swiss-Prot
Match: ERYA1_SACER (Erythronolide synthase, modules 1 and 2 OS=Saccharopolyspora erythraea GN=eryA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 47/143 (32.87%), Postives = 72/143 (50.35%), Query Frame = 2
Query:  281 NAFLFPGQGAQAVGMGKEAQSVPAAAELYKKANDIL----GFDLLEICTNGP-KEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGKAMQEAADAAKGAMVSIIG 694
            + F+FPGQGAQ  GM +E   VP  AE   + + +L    GF + E+    P    L+   + QP ++   ++   L RA       +       G S GE  A   AGA S EDG+++V  R +A++  A A +G+M+S+ G
Sbjct: 2507 SVFVFPGQGAQWEGMARELLPVPVFAESIAECDAVLSEVAGFSVSEVLEPRPDAPSLERVDVVQPVLFAVMVSLARLWRACGAVPSAV------IGHSQGEIAAAVVAGALSLEDGMRVVARRSRAVR--AVAGRGSMLSVRG 2641          
The following BLAST results are available for this feature:
BLAST of CN185693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PKSC_BACSU2.537e-1538.41Polyketide biosynthesis malonyl CoA-acyl carrier p... [more]
PKSE_BACSU3.314e-1539.42Polyketide biosynthesis protein pksE OS=Bacillus s... [more]
FABD_BUCAP2.148e-1436.17Malonyl CoA-acyl carrier protein transacylase OS=B... [more]
ERYA1_SACER8.446e-1132.87Erythronolide synthase, modules 1 and 2 OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185693 ID=CN185693; Name=CN185693; organism=Citrus sinensis; type=EST; length=701bp
ATGCCTACGCGTCCCCTCTCCTTCATCTTCTTCTTCTTCCCATTACATTT
TTTACACACATCCTCTAATGGCCACCACCACCTCTCTCGCTTTCTCCTCC
AGTTCACTCCACAACCGCTACCACAAGCGCACCACCTTTTTTAATGGGTC
TGCTGCTTCTTTCAACAGAATTGGAGTTCGAAGAAGCCTTGCCCGATCTG
GGGTTTTTATGAGCGTGTCTGTTGGCAAACACACTGCTGTAACTGTTGAT
GATGCCCTGTTTGCGGATTACAAGCCCACCAATGCTTTCTTGTTTCCTGG
TCAGGGTGCACAAGCAGTTGGAATGGGGAAGGAGGCTCAGAGCGTACCAG
CTGCCGCAGAGCTATACAAGAAAGCAAATGATATATTAGGTTTTGATTTG
CTAGAAATTTGCACCAATGGACCAAAAGAGAAGCTAGATTCAACTATTAT
CAGCCAGCCTGCCATCTATGTCACAAGTTTAGCGGCAGTTGAACTACTCC
GAGCTCGTGATGGAGGCCAGCAGATAATTGATTCTGTTGATGTCACTTGT
GGTCTGAGTTTAGGTGAATATACTGCTTTAGCCTTTGCTGGAGCTTTCAG
CTTTGAGGATGGACTGAAGCTGGTCAAACTAAGGGGAAAAGCTATGCAGG
AAGCTGCTGATGCTGCTAAAGGTGCCATGGTCAGCATTATTGGATTGGAT
T
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