CN185672

Overview
NameCN185672
Unique NameCN185672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2850 contig Csv1_Contig2850:52..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185672 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.450e-37
Identity = 85/155 (54.84%), Postives = 110/155 (70.97%), Query Frame = 3
Query:   63 MSDEEH---HFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDENLLSQIKDGFESGK-DLVVSVQCAMGEEQI 512
            MSD+ H   HF +  D+GA+ TFP+Q   +RKN +++IKGRPCK+VE+STSKTGKHGHAK H V IDIF  KKLEDI PS+HN DVP V R +Y L+ I +DG+ SL+  E+   KDDL+LP D  L  QI+D +E  +  ++V V  A+GEE I
Sbjct:    1 MSDDHHDDEHFHT-GDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEGSVLVQVVSAIGEEAI 152          
BLAST of CN185672 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.705e-36
Identity = 74/145 (51.03%), Postives = 107/145 (73.79%), Query Frame = 3
Query:   90 SKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 524
            ++A +GAS TFP Q   +RKNG++VIKG PCK+V++STSKTGKHGHAK +   IDIF GKK E+I PS+HN DVP+V+R +Y ++D+ +DG++SLL   G  K+DL LP D+ +  +I    + GK+ +VSV  A+G+E + ++K
Sbjct:   13 AQAGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDD-IGKEITQMLKEGKEPLVSVISALGKEGVVSVK 155          
BLAST of CN185672 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.662e-35
Identity = 81/156 (51.92%), Postives = 109/156 (69.87%), Query Frame = 3
Query:   72 EEHHFESK---ADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDENLLSQIKDGFESGK-DLVVSVQCAMGEEQINALK 524
            E+HH E +   A++GA+ TFP+Q   +RKN +++I+GRPCK+VE+STSKTGKHGHAK H V IDIF  KKLEDI PS+HN DVP V R +Y L+ I EDGF SL+  E+   KDDL++P + +L + I++  E  +  ++V V  A GEE I   K
Sbjct:    3 EDHHDEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMP-EGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYK 156          
BLAST of CN185672 vs. ExPASy Swiss-Prot
Match: IF5A_THEPD (Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk 5) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = 3
Query:  117 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQI 512
            T P++AG I+   +IVI G PCKVVEV  SKTGKHG AK   VGI  F+G K   +VP+    +VP + +   Q++    D  V L+     +  ++ +P +E + S++ +G E      V V   MG  +I
Sbjct:    3 TRPEEAGNIKVGSFIVIDGEPCKVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPIIKKFTAQVVAFVGDN-VQLMNLEDYSTFEIPMPQEEEIKSKLSEGVE------VEVWEVMGRHKI 127          
BLAST of CN185672 vs. ExPASy Swiss-Prot
Match: IF5A_SCHMA (Eukaryotic translation initiation factor 5A (Fragment) OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 3
Query:   99 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVG 248
            D GASKT P+Q   +RK G++V+K RPCK+VE+STSKTGKHG AK H VG
Sbjct:    3 DFGASKTLPKQCSALRKGGHVVMKDRPCKIVEMSTSKTGKHGSAKVHLVG 52          
BLAST of CN185672 vs. ExPASy Swiss-Prot
Match: IF5A_SULTO (Translation initiation factor 5A OS=Sulfolobus tokodaii GN=eif5a PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  135 GTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 458
            G ++   Y+VI G PC+VVE+S +KTGKHG AK + V I +F G+K   + P     +VP + +   Q++    D    +  EN  T  D+  PTD +++ +I+ G E
Sbjct:    9 GDLKVGNYVVIDGEPCRVVEISKAKTGKHGSAKANIVAIGLFTGQKRTLMAPVDQQVEVPIIEKHIGQILADKGDTITIMDMENYET-FDIEKPTDADIVDKIRPGAE 115          
BLAST of CN185672 vs. ExPASy Swiss-Prot
Match: IF5A_IGNH4 (Translation initiation factor 5A OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 3
Query:  111 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 458
            SKT+    G ++   +I+I G PCK+VE+S +KTGKHG AK H V I + +G K   + P     +VP + +   Q++ I+ D  V L+        ++ LP +E L S+++ G E
Sbjct:    2 SKTYAT-LGELKPGNFIMIDGEPCKIVEMSKAKTGKHGSAKAHVVAISLISGAKKTFVAPVDTRVEVPIIEKRVGQVLAITGDS-VQLMDMETYDTFEVPLPEEEELKSRLEPGVE 115          
BLAST of CN185672 vs. ExPASy Swiss-Prot
Match: IF5A_METS5 (Translation initiation factor 5A OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 45/130 (34.62%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  135 GTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 524
            G +++  YIVI G PC+VVEV+ +KTGKHG AK + + + IF G K   + P     +VP + +   Q+I    D    +  E   T  ++ +PT+E++ S+IK      KD  V     MG ++I  +K
Sbjct:    9 GEMKEGSYIVIDGEPCRVVEVTKAKTGKHGSAKANIIAVSIFTGAKKTLMAPVDSTVEVPIIEKRMGQVISNVGDKVQIMDLETYET-FEIDMPTEEDVASKIK------KDAEVEYWEVMGRKKIVRVK 131          
BLAST of CN185672 vs. ExPASy Swiss-Prot
Match: IF5A_SULAC (Translation initiation factor 5A OS=Sulfolobus acidocaldarius GN=eif5a PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 37/108 (34.26%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  135 GTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 458
            G ++   Y++I G PC+VVE++ +KTGKHG AK + V I +F G+K   + P     +VP + +   Q++    D    +  E+  T  DL  PT+  ++S+I+ G E
Sbjct:    9 GDLKVGSYVMIDGEPCRVVEITKAKTGKHGSAKANVVAIGLFTGQKRSLMAPVDQQVEVPIIEKHVGQILADKGDNLTIMDLESYET-FDLEKPTENEIVSKIRPGAE 115          
BLAST of CN185672 vs. ExPASy Swiss-Prot
Match: IF5A_STAMF (Translation initiation factor 5A OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 3
Query:  111 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 458
            SKT+    G ++   +I+I G PC++VE+S +KTGKHG AK H V I +F G K   + P     +VP + +   Q+I    D    +  E   T  ++  P+DE L  ++K G E
Sbjct:    2 SKTYAT-LGELKPGNFIIIDGEPCRIVEMSKAKTGKHGSAKAHVVAIGLFTGNKKTLVAPVDQRVEVPVIEKRVGQIIADMGDLLQVMDMETFET-FEVEKPSDEKLREKLKPGVE 115          
The following BLAST results are available for this feature:
BLAST of CN185672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
IF5A2_CAEEL5.450e-3754.84Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A_DICDI2.705e-3651.03Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A1_CAEEL6.662e-3551.92Eukaryotic translation initiation factor 5A-1 OS=C... [more]
IF5A_THEPD2.380e-1637.12Translation initiation factor 5A OS=Thermofilum pe... [more]
IF5A_SCHMA2.463e-1366.00Eukaryotic translation initiation factor 5A (Fragm... [more]
IF5A_SULTO3.217e-1336.11Translation initiation factor 5A OS=Sulfolobus tok... [more]
IF5A_IGNH49.361e-1335.34Translation initiation factor 5A OS=Ignicoccus hos... [more]
IF5A_METS51.223e-1234.62Translation initiation factor 5A OS=Metallosphaera... [more]
IF5A_SULAC2.085e-1234.26Translation initiation factor 5A OS=Sulfolobus aci... [more]
IF5A_STAMF2.724e-1235.34Translation initiation factor 5A OS=Staphylothermu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185672 ID=CN185672; Name=CN185672; organism=Citrus sinensis; type=EST; length=719bp
GTTCGATTCTACCAAAATTTGGTTGTCGAAGCTCTAATTGTGAATCGCAG
GAACCAGACGATATGTCGGACGAAGAGCACCACTTTGAGTCGAAGGCCGA
CGCCGGCGCCTCCAAGACATTTCCTCAGCAGGCCGGAACCATCCGCAAAA
ACGGTTATATCGTCATCAAAGGTCGTCCTTGCAAGGTTGTTGAGGTTTCA
ACTTCCAAGACTGGAAAGCACGGTCATGCTAAGTGTCACTTTGTAGGAAT
TGACATCTTCAATGGCAAGAAGCTTGAGGATATTGTTCCCTCTTCCCACA
ACTGTGATGTTCCTCATGTCACTCGCACTGACTACCAGCTGATTGATATC
TCTGAGGATGGATTTGTTAGCCTGCTGACTGAGAATGGCAATACCAAGGA
TGACCTGAGACTTCCAACTGATGAAAATCTGCTTTCACAGATCAAGGATG
GATTTGAGAGTGGGAAAGATCTGGTTGTCTCAGTTCAGTGTGCTATGGGA
GAGGAGCAGATCAATGCCCTGAAGGACATTGGCCCCAAGTAAAAGACTTT
TGCTTGATCGAGAATGCAGATTGCTGAAAGCTGTGGGAAGGTGGATAGTA
GTGTAGCTTTACTGGTGTCCGGTTTCAAGATGAATGCCATCATTTCATAT
AAAATGACTCTTACCATATTATTAATTGTTTTCTATCGACAGTATTTTTA
TTCTGTTTGATTGCTTGAA
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