CN185546

Overview
NameCN185546
Unique NameCN185546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10630 contig Csv1_Contig10630:554..1313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TXTP_RAT (Tricarboxylate transport protein, mitochondrial OS=Rattus norvegicus GN=Slc25a1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.992e-15
Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = -2
Query:  253 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 759
            V P E VK++    +  S    KY+G  H  R I+RE+GL G + G   TV++ G+NQA  F    +  +  W + +   K + P  + + G +AG A      P DV+KTR+    +G    KY+  +     I   EG  A +KG +PRL R+    AI++ + D+V
Sbjct:  140 VCPMETVKVKFIHDQTSSNP--KYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTS--LRNWYQGDNPNKPMNPLITGVFGAVAGAASVFGNTPLDVIKTRM----QGLEAHKYRNTLDCGVQILKNEGPKAFYKGTVPRLGRVCLDVAIVFVIYDEV 300          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: UCP4_HUMAN (Mitochondrial uncoupling protein 4 OS=Homo sapiens GN=SLC25A27 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.112e-14
Identity = 49/163 (30.06%), Postives = 75/163 (46.01%), Query Frame = -2
Query:  298 PFEVVKIRLQQQRGLSL--------ELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRG---GGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMR 753
            P ++ K RLQ Q   +L        E   Y+G +  A  II EEG   LW G  P + R+                +++ K E +   L  W+S+I G +AG  G     P D+VK ++  + +    G  L+++G+ HA   I AE G+  LW G +P + R
Sbjct:   39 PLDLTKTRLQMQGEAALARLGDGARESAPYRGMVRTALGIIEEEGFLKLWQGVTPAIYRHVVYSGGRMVTYEHLREVVFGKSEDEHYPL--WKSVIGGMMAGVIGQFLANPTDLVKVQMQMEGKRKLEGKPLRFRGVHHAFAKILAEGGIRGLWAGWVPNIQR 199          

HSP 2 Score: 74.7146 bits (182), Expect = 6.103e-13
Identity = 50/172 (29.07%), Postives = 81/172 (47.09%), Query Frame = -2
Query:  253 PFEVVKIRLQQQ--RGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNG-TNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRG--GGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 753
            P ++VK+++Q +  R L  + L+++G  H    I+ E G+ GLWAG  P + R    N   + T       L+      D  +     S+ SG +A   G     P DV+K+R+M Q R   G  L YK     +      EG ++L+KG LP  +R+ P   + W   +++
Sbjct:  147 PTDLVKVQMQMEGKRKLEGKPLRFRGVHHAFAKILAEGGIRGLWAGWVPNIQRAALVNMGDLTTYDTVKHYLVLNTPLEDNIMTHGLSSLCSGLVASILGT----PADVIKSRIMNQPRDKQGRGLLYKSSTDCLIQAVQGEGFMSLYKGFLPSWLRMTPWSMVFWLTYEKI 314          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TPC1_COCIM (Mitochondrial thiamine pyrophosphate carrier 1 OS=Coccidioides immitis GN=TPC1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.452e-14
Identity = 61/177 (34.46%), Postives = 85/177 (48.02%), Query Frame = -2
Query:  253 VTPFEVVKIRLQQQ-RGLSLELLK-------YKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 759
            V P +VVKIRLQ Q   LS  L         YKG I   + I REEG+ GLW G  P  +      A  FT        L        ++ QP +S +SG  AG  G   T PFD+++TR  AQ   G +  Y  ++ AIR+I+A EG    ++G+   + +I P   + +A  + V
Sbjct:   32 VAPLDVVKIRLQLQIHSLSDPLSHKNIRGPVYKGTISTLKAIFREEGITGLWKGNIPAELLYIFYGAIQFTTYRTVTQSLHTLPP-PYRLPQPAESFVSGATAGGIGTFTTYPFDLLRTRFAAQ---GNDKIYPSLLTAIRSIHAHEGSRGFFRGVSAAVAQIVPYMGLFFATYESV 204          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: S2545_MOUSE (Solute carrier family 25 member 45 OS=Mus musculus GN=Slc25a45 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.452e-14
Identity = 49/164 (29.88%), Postives = 84/164 (51.22%), Query Frame = -2
Query:  280 VTPFEVVKIRLQQQRG----LSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQA 759
            + PF+++K+RLQ Q      +S  + +Y+GP+HCA  I+REEG  GL+ G+   V+R+       F         L +++  +G+       +++G  AG A  +   PFDV+K+R+      G   KY GM+  + + + +EG+   +KG+     R  P  A
Sbjct:  117 LAPFDLIKVRLQNQTEPRMQISSSMPRYRGPVHCAASILREEGPQGLFRGSWALVLRDTPTLGMYFVTYEG----LCRQYTPEGQNPSSATVLVAGGFAGIASWITATPFDVIKSRMQMDGLKG--RKYGGMLDCMASSFRQEGIGVFFKGMTLNSARAFPVNA 274          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: ODC1_YEAST (Mitochondrial 2-oxodicarboxylate carrier 1 OS=Saccharomyces cerevisiae GN=ODC1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.452e-14
Identity = 55/173 (31.79%), Postives = 82/173 (47.40%), Query Frame = -2
Query:  241 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFY 759
            V PFE+VKIRLQ          ++K PI   +  + + G+  L+ G   T+ R+    A  F        LL        K       +I+G + GT G +   PFDVVK+R+   S  G   KY   + ++  +Y EEG  AL+KG  P++MR+ PG  ++  V   V  F+
Sbjct:  140 VAPFELVKIRLQDVNS------QFKTPIEVVKNSVVKGGVLSLFNGLEATIWRHVLWNAGYFGIIFQIRKLLPAAKTSTEKTRN---DLIAGAIGGTVGCLLNTPFDVVKSRIQRSS--GPLRKYNWSLPSVLLVYREEGFKALYKGFAPKVMRLAPGGGLLLVVFTNVMDFF 301          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: MFRN_DICDI (Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.897e-14
Identity = 55/187 (29.41%), Postives = 89/187 (47.59%), Query Frame = -2
Query:  265 TPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPW--------------QSMISGFLAGTAGPVCTGPFDVVKTRLMAQS---------RGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAV 756
            +P +VVK RLQ      L++  YKG   C + I  +EG+ G ++G   T++ N             ++++ +  +E   K++QPW                +++G  AG      T PFDVVKTRL  QS               +Y GM+ A++TI+ EEG+    +G+ PR++      AI+W+V
Sbjct:  129 SPMDVVKQRLQ------LQITDYKGLTDCTKRIWVKEGIRGFYSGYTTTLVMNVP-----------YNIVYFASYESLKKIIQPWFNNKNPEERSYQLIDHLVAGGGAGMLAAAFTNPFDVVKTRLQTQSDFIASSTINSAKSIKRYGGMMDAMKTIWIEEGMDGYLRGMKPRMVFHSMSSAIVWSV 298          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: HDCPB_DANRE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog B OS=Danio rerio GN=hdmcpb PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.519e-14
Identity = 54/175 (30.86%), Postives = 89/175 (50.86%), Query Frame = -2
Query:  253 VTPFEVVKIRLQQQ----RGLSLELL-KYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQ-SMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 759
            + P ++VK+RLQ Q    + +S E   KY+GP+ C   I R+EGL GL+ G+A   +R+G + A  F   N    +L  +++  G     W   +++G ++G  G     P DV+K+RL      G   +Y+G +H I      EG   L++GL    +R  P    ++A+ + V
Sbjct:  116 MAPADIVKVRLQCQTEPVQHISQESSSKYRGPVQCLLRIARDEGLLGLYKGSAALALRDGPSFATYFLTYNTICEILTTENQRPG-----WPVVLLAGGVSGMCGWAVGTPMDVIKSRLQVDGVSG--RRYRGFLHCITHSVRTEGSGVLFRGLTVNCIRAFPVNMSVFAMYEAV 283          

HSP 2 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 49/165 (29.70%), Postives = 71/165 (43.03%), Query Frame = -2
Query:  280 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF-TAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGEL------KYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQA 753
            P + VK+RLQ Q G       Y G   C R   R EGL G + G +  +     + + +F T +N    L   +H   G+        ++GF  G    +   P D+VK RL  Q+     +      KY+G V  +  I  +EGLL L+KG     +R  P  A
Sbjct:   22 PLDTVKVRLQTQTG-------YSGFWQCVRKTCRNEGLQGFYRGMSMPISTVSISSSLVFGTYRNILQFLHQLQHRSAGEPHHKAHIFLAGFTGGVTQVLVMAPADIVKVRLQCQTEPVQHISQESSSKYRGPVQCLLRIARDEGLLGLYKGSAALALRDGPSFA 179          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TPC1_MAGGR (Mitochondrial thiamine pyrophosphate carrier 1 OS=Magnaporthe grisea GN=TPC1 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.209e-14
Identity = 55/180 (30.56%), Postives = 86/180 (47.78%), Query Frame = -2
Query:  253 VTPFEVVKIRLQ-QQRGLS------LELLK----YKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 759
            + P +VVKIRLQ Q   LS       ELL+    YKG +   R I R+EG+ GLW G  P  +   T  A  F    +   LL +    D ++    +S ++G  AG      T P D+++TR  AQ  G   + Y+ +  A+  I+ +EG    ++G+ P + +  P   I +A  + +
Sbjct:   33 IAPLDVVKIRLQLQTHSLSDPLSQRAELLRGGPVYKGTLSTMRHIARQEGITGLWKGNVPAELLYITYSAVQFATYRSAAQLLHRVAGEDRQLPAAAESFVAGAAAGVTSTTVTYPLDLLRTRFAAQGSGDDRV-YQSLRRAVADIWRDEGYRGFFRGIGPAVGQTFPFMGIFFAAYESL 211          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: YETC_SCHPO (Uncharacterized mitochondrial carrier C8C9.12c OS=Schizosaccharomyces pombe GN=SPAC8C9.12c PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.415e-14
Identity = 57/168 (33.93%), Postives = 80/168 (47.62%), Query Frame = -2
Query:  268 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGEL----KYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWA 759
            +TPF+V+K R+Q      L   KYK  +HCA  + R EGL G +  + PT +      +  FTA                 V  P   +ISG L+G      T P DVVKT L  Q+RG   +    K KG +  +R IY   G+ + +KG+ PR++   P  A+ WA
Sbjct:  131 MTPFDVIKQRMQ------LPSRKYKSALHCATTVFRNEGL-GAFYISYPTCIA----MSIPFTAIQVATYDTCMSFLNPNAVYDPTSHIISGGLSGAIASSLTTPLDVVKTLL--QTRGSSSIPEVRKCKGSLDVVRFIYNYGGIPSFFKGIRPRMVVAMPATAVSWA 285          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: UCP3_MOUSE (Mitochondrial uncoupling protein 3 OS=Mus musculus GN=Ucp3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.415e-14
Identity = 59/183 (32.24%), Postives = 86/183 (46.99%), Query Frame = -2
Query:  214 PFEVVKIRLQQQRGLSLE-LLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNG-TNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV-TGFYERRYLRNAP 753
            P +VVK+R Q    L      KY+G +   R I REEG+ GLW G  P + RN   N A M T    +D++  K  E            +S F AG    V   P DVVKTR M    G    +Y+  +H +  + A+EG  A +KG +P  +R+     +M+   +Q+     + + LR +P
Sbjct:  133 PTDVVKVRFQAMIRLGTGGERKYRGTMDAYRTIAREEGVRGLWKGTWPNITRNAIVNCAEMVT----YDIIKEKLLESHLFTDNFPCHFVSAFGAGFCATVVASPVDVVKTRYMNAPLG----RYRSPLHCMLKMVAQEGPTAFYKGFVPSFLRLGAWNVMMFVTYEQLKRALMKVQVLRESP 307          
The following BLAST results are available for this feature:
BLAST of CN185546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
TXTP_RAT4.992e-1532.54Tricarboxylate transport protein, mitochondrial OS... [more]
UCP4_HUMAN1.112e-1430.06Mitochondrial uncoupling protein 4 OS=Homo sapiens... [more]
TPC1_COCIM1.452e-1434.46Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
S2545_MOUSE1.452e-1429.88Solute carrier family 25 member 45 OS=Mus musculus... [more]
ODC1_YEAST1.452e-1431.79Mitochondrial 2-oxodicarboxylate carrier 1 OS=Sacc... [more]
MFRN_DICDI1.897e-1429.41Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=... [more]
HDCPB_DANRE5.519e-1430.86Hepatocellular carcinoma down-regulated mitochondr... [more]
TPC1_MAGGR7.209e-1430.56Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
YETC_SCHPO9.415e-1433.93Uncharacterized mitochondrial carrier C8C9.12c OS=... [more]
UCP3_MOUSE9.415e-1432.24Mitochondrial uncoupling protein 3 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185546 ID=CN185546; Name=CN185546; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTGAGAAAATCTGGCAACTACCTACATTTTCCCCTTCC
TAGGCATGGCAAATTACTGATTCGGTCTACAAAAACTGGTGTTCAATCAA
AGAATCCTTAAGAACTCAAAAAGAAATGCTGAAGCAATTCATAGCTTCAT
GCTAGCAATGGAAGTATGTAACTAAAATGTAGAATAGGCAAAACAATAAA
ATAGTACCTATAAGGGTGCATTGCGAAGATATCTCCTCTCATAAAAACCA
GTCACTTGGTCAGCCACAGCCCACATAATGGCCTGGCCTGGCGGGATCCT
CATGAGACGGGGCAGCAGTCCTTTCCACAAGGCAAGAAGCCCCTCCTCAG
CATATATTGTTCTGATTGCATGGACCATGCCTTTGTACTTTAACTCACCC
CCACCTCGACTCTGGGCCATCAGCCTTGTCTTGACAACATCAAAAGGGCC
AGTGCATACTGGACCTGCTGTTCCTGCAAGGAATCCCGATATCATGGACT
GCCACGGTTGGAGGACCTTCCCATCACCTTCATGTTTCTTCCACAAGAGT
ACATCAAAAGCATTTTTAGCCGTAAACATGGCAGCTTGGTTTGTCCCATT
GCGCATAACAGTTGGGGCAGCCCCTGCCCAGAGTCCAAAGAGTCCTTCCT
CACGGATGATCATACGAGCACAGTGTATAGGACCCTTGTACTTTAGAAGC
TCAAGACTCAAACCTCTCTGCTGTTGTAGTCTAATTTTCACCACCTCAAA
AGGAGTAACA
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