CN185546

Overview
NameCN185546
Unique NameCN185546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10630 contig Csv1_Contig10630:554..1313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: HDMCP_RAT (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog OS=Rattus norvegicus GN=Hdmcp PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.415e-14
Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = -2
Query:  253 KYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 693
            KY GP+HC   + REEGL GL+ G++  ++R G + A  F +       L    +    VL     +++G  AG        P DV+K+RL  Q+ G G+ +Y+G++H + T   EEG   L+KGL     R  P   +++   + V
Sbjct:  160 KYSGPLHCLVTVAREEGLRGLYKGSSALLLREGHSFATYFLSYAVLSEWLTPAGQSQPDVL---GVLVAGGCAGVLAWAVATPMDVIKSRL--QADGQGQQRYRGLLHCVVTSVREEGPRVLFKGLALNCCRAFPVNMVVFVAYEAV 301          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: UCP3_RAT (Mitochondrial uncoupling protein 3 OS=Rattus norvegicus GN=Ucp3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.606e-13
Identity = 58/183 (31.69%), Postives = 86/183 (46.99%), Query Frame = -2
Query:  214 PFEVVKIRLQQQRGLSLE-LLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNG-TNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV-TGFYERRYLRNAP 753
            P +VVK+R Q    L      KY+G +   R I REEG+ GLW G  P + RN   N A M T    +D++  K  +            +S F AG    V   P DVVKTR M    G    +Y+  +H +  + A+EG  A +KG +P  +R+     +M+   +Q+     + + LR +P
Sbjct:  133 PTDVVKVRFQAMIRLGTGGERKYRGTMDAYRTIAREEGVRGLWKGTWPNITRNAIVNCAEMVT----YDIIKEKLLDSHLFTDNFPCHFVSAFGAGFCATVVASPVDVVKTRYMNAPPG----RYRSPLHCMLRMVAQEGPTAFYKGFMPSFLRLGSWNVMMFVTYEQLKRALMKVQVLRESP 307          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: MCATL_HUMAN (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Homo sapiens GN=SLC25A29 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.739e-13
Identity = 51/168 (30.36%), Postives = 81/168 (48.21%), Query Frame = -2
Query:  250 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVT 753
            PF+ VK+RLQ Q   S+E  +Y+G +HC + II++E + GL+ G    +M      A +F  +   + L    H+       P    ++G  AG    V   P ++ KTRL  Q  G     YKG +  +  IY  EGL  + +G++  L+R  P   + +   D +T
Sbjct:   21 PFDTVKVRLQVQ---SVEKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQG--NTLRALGHD------SPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQDAGPAR-TYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALT 176          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: M2OM_NEUCR (Putative mitochondrial 2-oxoglutarate/malate carrier protein OS=Neurospora crassa GN=NCU10732 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.739e-13
Identity = 62/171 (36.26%), Postives = 81/171 (47.37%), Query Frame = -2
Query:  259 PFEVVKIRLQQQRGLS--LELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN---GTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRG-GGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVAD 753
            P ++  IR+Q   GL    E   YK  I     I R EG+  LWAGAAPTV+R       Q A F+   A    L  + +   KV     S I+GF A       + PFD VKTRL  Q+RG  G+L Y GMV     +  +EG+   ++G     +RI P   +   VAD
Sbjct:  162 PADLALIRMQSD-GLKPVAERKNYKSVIDALGGIARNEGVAALWAGAAPTVVRAMALNFGQLAFFSEAKA---QLKARTQWSSKVQTLSASAIAGFFAS----FFSLPFDFVKTRLQKQTRGPDGKLPYNGMVDCFAKVAKQEGVFRFYRGFGTYYVRIAPHAMVTLLVAD 324          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: GDC_MOUSE (Graves disease carrier protein homolog OS=Mus musculus GN=Slc25a16 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.739e-13
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = -2
Query:  289 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEE-GLLALWKGLLPRLMRIPP 759
            V P + VK+ LQ          K+ G +   R + ++EG  GL+ G    ++R     A  F A   +   +  K    G V      +++G +AG    +CT P DVV+ RL  Q +  GE  Y G++HA +TIYA+E G L  ++GL+P ++ + P
Sbjct:   54 VAPLDRVKVLLQAHN----RHYKHLGVLSTLRAVPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKLGVSGHV----HRLMAGSMAGMTAVICTYPLDVVRVRLAFQVK--GEHTYSGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAP 201          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: MCFL_DICDI (Mitochondrial substrate carrier family protein L OS=Dictyostelium discoideum GN=mcfL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.578e-13
Identity = 52/172 (30.23%), Postives = 81/172 (47.09%), Query Frame = -2
Query:  241 PFEVVKIRLQ-QQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFY 753
            P E VK +LQ Q  G+ L    Y GPI C + I    G+ GL+    PT    G  + +++     +++        DG +    +S I+G +AGT   +   PFDV+++R+M         +YKGM+   + IY  +GL   WKG  P L+R  P     +   + V  F+
Sbjct:  125 PIETVKSKLQVQYTGVKL----YNGPIDCIKKI----GIRGLYKALIPT----GFQRNSLYAYFGCYELAQRYLRREDGSMTMG-RSFIAGGIAGTGFWLTNFPFDVIRSRIMTMPYNESPPRYKGMIDCAKHIYRVDGLKGFWKGFSPCLLRTFPANGATFVAYECVMKFF 283          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: HDMCP_MOUSE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog OS=Mus musculus GN=Hdmcp PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.673e-13
Identity = 58/193 (30.05%), Postives = 86/193 (44.56%), Query Frame = -2
Query:  253 TPFEVVKIRLQ-------QQRGLSLELL------------------KYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 756
            +P EV K+RLQ       QQR  S                      KY GP+HC   + REEGL GL+ G++  ++R G + A  F +       L         VL     +++G  AG        P DV+K+RL  Q+ G G+ +Y+G++H + T   EEG   L+KGL     R  P   +++   + V
Sbjct:  114 SPTEVAKVRLQTQTQAQTQQRRSSASWTSGAPALCPTPTACLEPRPKYSGPLHCLVTVAREEGLRGLYKGSSALLLREGHSFATYFLSYAMLCEWLTPAGHSQPDVL---GVLVAGGCAGVLAWAVATPMDVIKSRL--QADGQGQHRYRGLLHCVVTSVREEGPRVLFKGLALNCCRAFPVNMVVFVAYEAV 301          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: MFTC_MACFA (Mitochondrial folate transporter/carrier OS=Macaca fascicularis GN=SLC25A32 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.970e-13
Identity = 54/153 (35.29%), Postives = 71/153 (46.41%), Query Frame = -2
Query:  304 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSR---GGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRL 753
            P ++VKIR     GL L   KY G +HC   I + +GL GL+ G  P V   G +    F   NA       K EG  + L+  + ++S   AG      T P  V KTRLM Q          +YKGM   +  IY  EG+  L+KG +P L
Sbjct:   42 PLDLVKIRFAVSDGLELRP-KYNGILHCLTTIWKLDGLRGLYQGVTPNVWGAGLSWGLYFFFYNAIKSY---KTEGRAERLEATEYLVSAAEAGAMTLCITNPLWVTKTRLMLQYDAVINSPHRQYKGMFDTLVKIYKYEGVRGLYKGFVPGL 190          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: GDC_HUMAN (Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.970e-13
Identity = 49/158 (31.01%), Postives = 78/158 (49.37%), Query Frame = -2
Query:  289 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEE-GLLALWKGLLPRLMRIPP 759
            V P + VK+ LQ          K+ G     R + ++EG  GL+ G    ++R     A  F A   +  L+  K    G V      +++G +AG    +CT P D+V+ RL  Q +G  E  Y G++HA +TIYA+E G    ++GL+P ++ + P
Sbjct:   54 VAPLDRVKVLLQAHN----HHYKHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGISGHV----HRLMAGSMAGMTAVICTYPLDMVRVRLAFQVKG--EHSYTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAP 201          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: GDC_BOVIN (Graves disease carrier protein OS=Bos taurus GN=SLC25A16 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.970e-13
Identity = 49/158 (31.01%), Postives = 79/158 (50.00%), Query Frame = -2
Query:  289 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEE-GLLALWKGLLPRLMRIPP 759
            V P + VK+ LQ          ++ G     R + ++EG  GL+ G    ++R     A  F A   +  L+  K    G V      +++G +AG    +CT P D+V+ RL  Q +G  E  Y G++HA +TIYA+E G L  ++GL+P ++ + P
Sbjct:   52 VAPLDRVKVLLQAHN----HHYRHLGVFSTLRAVPKKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGVSGHV----HRLMAGSMAGMTAVICTYPLDMVRVRLAFQVKG--EHTYTGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAP 199          
The following BLAST results are available for this feature:
BLAST of CN185546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
HDMCP_RAT9.415e-1431.97Hepatocellular carcinoma down-regulated mitochondr... [more]
UCP3_RAT1.606e-1331.69Mitochondrial uncoupling protein 3 OS=Rattus norve... [more]
MCATL_HUMAN2.739e-1330.36Mitochondrial carnitine/acylcarnitine carrier prot... [more]
M2OM_NEUCR2.739e-1336.26Putative mitochondrial 2-oxoglutarate/malate carri... [more]
GDC_MOUSE2.739e-1331.65Graves disease carrier protein homolog OS=Mus musc... [more]
MCFL_DICDI3.578e-1330.23Mitochondrial substrate carrier family protein L O... [more]
HDMCP_MOUSE4.673e-1330.05Hepatocellular carcinoma down-regulated mitochondr... [more]
MFTC_MACFA7.970e-1335.29Mitochondrial folate transporter/carrier OS=Macaca... [more]
GDC_HUMAN7.970e-1331.01Graves disease carrier protein OS=Homo sapiens GN=... [more]
GDC_BOVIN7.970e-1331.01Graves disease carrier protein OS=Bos taurus GN=SL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185546 ID=CN185546; Name=CN185546; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTGAGAAAATCTGGCAACTACCTACATTTTCCCCTTCC
TAGGCATGGCAAATTACTGATTCGGTCTACAAAAACTGGTGTTCAATCAA
AGAATCCTTAAGAACTCAAAAAGAAATGCTGAAGCAATTCATAGCTTCAT
GCTAGCAATGGAAGTATGTAACTAAAATGTAGAATAGGCAAAACAATAAA
ATAGTACCTATAAGGGTGCATTGCGAAGATATCTCCTCTCATAAAAACCA
GTCACTTGGTCAGCCACAGCCCACATAATGGCCTGGCCTGGCGGGATCCT
CATGAGACGGGGCAGCAGTCCTTTCCACAAGGCAAGAAGCCCCTCCTCAG
CATATATTGTTCTGATTGCATGGACCATGCCTTTGTACTTTAACTCACCC
CCACCTCGACTCTGGGCCATCAGCCTTGTCTTGACAACATCAAAAGGGCC
AGTGCATACTGGACCTGCTGTTCCTGCAAGGAATCCCGATATCATGGACT
GCCACGGTTGGAGGACCTTCCCATCACCTTCATGTTTCTTCCACAAGAGT
ACATCAAAAGCATTTTTAGCCGTAAACATGGCAGCTTGGTTTGTCCCATT
GCGCATAACAGTTGGGGCAGCCCCTGCCCAGAGTCCAAAGAGTCCTTCCT
CACGGATGATCATACGAGCACAGTGTATAGGACCCTTGTACTTTAGAAGC
TCAAGACTCAAACCTCTCTGCTGTTGTAGTCTAATTTTCACCACCTCAAA
AGGAGTAACA
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