CN185546

Overview
NameCN185546
Unique NameCN185546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10630 contig Csv1_Contig10630:554..1313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TPC_PONAB (Mitochondrial thiamine pyrophosphate carrier OS=Pongo abelii GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12
Identity = 54/179 (30.17%), Postives = 83/179 (46.37%), Query Frame = -2
Query:  238 VTPFEVVKIRLQQQR---GLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQ-SMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELK-YKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYE 759
            ++PF+V+KIR Q Q      S    KY G +  +R I++EEG    W G  P  + +    A  F +   F++L    H G     + +    + G LA     +   P DV++TR  AQ    GE K Y  + HA+ T+Y  EG    +KGL P L+ I P   + ++    +   Y+
Sbjct:   33 ISPFDVIKIRFQLQHERLSRSDPNAKYHGILQASRQILQEEGPTAFWKGHIPAQILSIGYGAVQFLS---FEMLTELVHRGSVYDAREFSVHFVCGGLAACMATLTVHPVDVLRTRFAAQ----GEPKVYNTLCHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYK 204          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TPC_HUMAN (Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12
Identity = 54/179 (30.17%), Postives = 83/179 (46.37%), Query Frame = -2
Query:  238 VTPFEVVKIRLQQQR---GLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQ-SMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELK-YKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYE 759
            ++PF+V+KIR Q Q      S    KY G +  +R I++EEG    W G  P  + +    A  F +   F++L    H G     + +    + G LA     +   P DV++TR  AQ    GE K Y  + HA+ T+Y  EG    +KGL P L+ I P   + ++    +   Y+
Sbjct:   33 ISPFDVIKIRFQLQHERLSRSDPSAKYHGILQASRQILQEEGPTAFWKGHVPAQILSIGYGAVQFLS---FEMLTELVHRGSVYDAREFSVHFVCGGLAACMATLTVHPVDVLRTRFAAQ----GEPKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYK 204          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: S2543_DANRE (Solute carrier family 25 member 43 OS=Danio rerio GN=slc25a43 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12
Identity = 54/186 (29.03%), Postives = 90/186 (48.39%), Query Frame = -2
Query:  223 TPFEVVKIRLQQQRGLSLELLKYKGPIHCAR-------MIIREEGLFGLWAGAAPTVMRNGTNQAA-MFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRYLR 756
            +P EVVKI            L   G  HC R       +I + EGL   W G   + +R     A  + T KN  ++     H  +   +  W+++++G LAG +  + T P +VV+TRL+AQ+    E  Y+G++H++  IY  EGL AL++G    ++   P     +AV   +   ++ R++R
Sbjct:   31 SPLEVVKI------------LSQVGTFHCKRGFLHSFVLICQNEGLRAFWKGNMVSCLRLFPYSAIHLATYKNIVNL-----HIDELGDISQWRAIVAGGLAGISAALATYPLEVVETRLIAQN--CQEPTYRGLLHSLSVIYRNEGLQALYRGFSLTVLGAVPFSVGCYAVYINLDKLWQERHVR 197          

HSP 2 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 47/160 (29.38%), Postives = 76/160 (47.50%), Query Frame = -2
Query:  289 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSR-----GGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPP 753
            P EVV+ RL  Q   + +   Y+G +H   +I R EGL  L+ G + TV+         +      D L  ++H     +    Q+ I+G LA       + PF+ VK ++ AQS      GG ++ + GM    R +   +G++ALW GL   +++I P
Sbjct:  125 PLEVVETRLIAQ---NCQEPTYRGLLHSLSVIYRNEGLQALYRGFSLTVLGAVPFSVGCYAVYINLDKLWQERHVRFTSL----QNFINGCLAAGVAQTLSFPFETVKKKMQAQSLVLPHCGGVDVHFNGMADCFRQVIKNKGVMALWSGLTANMVKIVP 277          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: MCP62_DANRE (Putative mitochondrial carrier protein FLJ44862 homolog OS=Danio rerio GN=zgc:92090 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12
Identity = 54/181 (29.83%), Postives = 83/181 (45.86%), Query Frame = -2
Query:  271 PFEVVKIRLQQQ-------------------RGLSLELLK-YKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMW 753
            P ++VKIRLQ Q                   R + ++    Y+GP+HC   +++ EG+ GL+ GA   ++R+    A  F     F   L   +  D     P    ++G LAG+   V   P DVVK+RL A +    + KYKG++H I   Y  EG+   ++G     +R  P  A M+
Sbjct:  121 PVDLVKIRLQMQTQPVLAENFNLAGNGSVPLRSMGIQSQSFYRGPLHCISTVLQNEGIQGLYRGAGAMILRDIPGYALYFIPYTLFCNWL---NPDDNSSPPPCCIWLAGGLAGSISWVTATPSDVVKSRLQADAM--HQRKYKGILHCIMQSYRTEGIHVFFRGATVNAIRGFPMCATMF 296          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: CMC1_MOUSE (Calcium-binding mitochondrial carrier protein Aralar1 OS=Mus musculus GN=Slc25a12 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12
Identity = 52/155 (33.55%), Postives = 73/155 (47.10%), Query Frame = -2
Query:  289 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPP 753
            P E+VKIRLQ    ++       GP   A  ++++ GLFGL+ GA    +R+    A  F       +LL  ++   G +      + +G LAG        P DV+KTRL   +R G +  Y G+V   R I  EEG  A WKG   R+ R  P
Sbjct:  446 PLEIVKIRLQVAGEITT------GPRVSALNVLQDLGLFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGRVGGI----NLLTAGALAGVPAASLVTPADVIKTRLQVAARAG-QTTYSGVVDCFRKILREEGPSAFWKGTAARVFRSSP 589          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: UCP2_RAT (Mitochondrial uncoupling protein 2 OS=Rattus norvegicus GN=Ucp2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 53/168 (31.55%), Postives = 74/168 (44.05%), Query Frame = -2
Query:  253 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNG-TNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 753
            P +VVK+R Q Q        +Y+  +   + I REEG+ GLW G +P V RN   N   + T     D LL      D           S F AG    V   P DVVKTR M  + G    +Y    H   T+  +EG  A +KG +P  +R+     +M+   +Q+
Sbjct:  136 PTDVVKVRFQAQARAGGGR-RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCTELVTYDLIKDTLLKANLMTDDLPCH----FTSAFGAGFCTTVIASPVDVVKTRYMNSALG----QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQL 294          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TPC1_ASPTN (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 56/180 (31.11%), Postives = 82/180 (45.56%), Query Frame = -2
Query:  253 VTPFEVVKIRLQQQ----------RGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTA-KNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 759
            V P +VVKIRLQ Q          R +S  +  YKG I   R IIREEG+ GLW G  P  +         FT  +     L    H    ++ QP +S ++G  AG      T P D+++TR  AQ   G E  Y  ++ ++R I   EG    ++G    + +I P   + +A  + +
Sbjct:   32 VAPLDVVKIRLQLQIHSLSDPSSHRNVSGPI--YKGTISTMRAIIREEGITGLWKGNIPAELMYVCYGGVQFTTYRTTTQALAQLPH----RLPQPVESFVAGASAGGLATAATYPLDLLRTRFAAQ---GTERVYTSLLASVRDIARIEGPAGFFRGCSAAVGQIVPYMGLFFATYESL 202          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: MCATL_RAT (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Rattus norvegicus GN=Slc25a29 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 49/168 (29.17%), Postives = 79/168 (47.02%), Query Frame = -2
Query:  250 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVT 753
            PF+ VK+RLQ Q   + E  +Y+G +HC + II++E + GL+ G    +M      A +F  +      L +          P    ++G  AG    V   P ++ KTRL  Q+ G     YKG +  +  IY  EGL  + +G++  L+R  P   + +   D +T
Sbjct:   21 PFDTVKVRLQVQ---NTEKPQYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGQD--------SPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQAAGPAR-AYKGSLDCLVQIYRHEGLRGINRGMVSTLLRETPSFGVYFLTYDVLT 176          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: UCP5_HUMAN (Brain mitochondrial carrier protein 1 OS=Homo sapiens GN=SLC25A14 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11
Identity = 56/175 (32.00%), Postives = 83/175 (47.43%), Query Frame = -2
Query:  253 PFEVVKIRLQQQRGLSLELLKYKGPIHCARM-IIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKH------EGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELK-YKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 753
            P +V+KIR+Q Q  L      ++G +  + + I ++EG  GLW G  PT  R     AA+          + KKH       GD  +       +S F  G AG + + P DVV+TR+M Q    G +  YKG V  I  ++  EG  AL+KG  P  +R+ P   I +   +Q+
Sbjct:  161 PTDVLKIRMQAQGSL------FQGSMIGSFIDIYQQEGTRGLWRGVVPTAQR-----AAIVVGVELPVYDITKKHLILSGMMGDTILTH----FVSSFTCGLAGALASNPVDVVRTRMMNQRAIVGHVDLYKGTVDGILKMWKHEGFFALYKGFWPNWLRLGPWNIIFFITYEQL 320          

HSP 2 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 46/156 (29.49%), Postives = 76/156 (48.72%), Query Frame = -2
Query:  298 PFEVVKIRLQQQRGLSLEL----LKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMR 753
            P ++ K RLQ Q G S++     +KY+G  H    I +EEG+  L++G AP ++R  +          +   L  ++ E +  ++    +MI G ++G        P DV+K R+ AQ    G L    M+ +   IY +EG   LW+G++P   R
Sbjct:   60 PVDLTKTRLQVQ-GQSIDARFKEIKYRGMFHALFRICKEEGVLALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLI----NMICGVVSGVISSTIANPTDVLKIRMQAQ----GSLFQGSMIGSFIDIYQQEGTRGLWRGVVPTAQR 206          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: UCP3_CANFA (Mitochondrial uncoupling protein 3 OS=Canis familiaris GN=UCP3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11
Identity = 57/183 (31.15%), Postives = 82/183 (44.81%), Query Frame = -2
Query:  214 PFEVVKIRLQQQRGLSL-ELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNG-TNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV-TGFYERRYLRNAP 753
            P +VVK+R Q    L      KY G +   R I REEG+ GLW G  P + RN   N A M T    +D++  K  +           +IS F AG    V   P DVVKTR M    G    +Y   +  +  +  +EG  A +KG  P  +R+     +M+   +Q+     + + LR +P
Sbjct:  136 PTDVVKVRFQASIHLGAGSNRKYSGTMDAYRTIAREEGVRGLWKGTLPNITRNAIVNCAEMVT----YDIIKEKLLDYHLLTDNFPCHLISAFGAGFCATVVASPVDVVKTRYMNSPPG----QYCSPLDCMLKMVTQEGPTAFYKGFTPSFLRLGTWNVVMFVTYEQLKRALMKVQMLRESP 310          
The following BLAST results are available for this feature:
BLAST of CN185546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
TPC_PONAB6.747e-1230.17Mitochondrial thiamine pyrophosphate carrier OS=Po... [more]
TPC_HUMAN6.747e-1230.17Mitochondrial thiamine pyrophosphate carrier OS=Ho... [more]
S2543_DANRE6.747e-1229.03Solute carrier family 25 member 43 OS=Danio rerio ... [more]
MCP62_DANRE6.747e-1229.83Putative mitochondrial carrier protein FLJ44862 ho... [more]
CMC1_MOUSE6.747e-1233.55Calcium-binding mitochondrial carrier protein Aral... [more]
UCP2_RAT8.812e-1231.55Mitochondrial uncoupling protein 2 OS=Rattus norve... [more]
TPC1_ASPTN8.812e-1231.11Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
MCATL_RAT8.812e-1229.17Mitochondrial carnitine/acylcarnitine carrier prot... [more]
UCP5_HUMAN1.151e-1132.00Brain mitochondrial carrier protein 1 OS=Homo sapi... [more]
UCP3_CANFA1.151e-1131.15Mitochondrial uncoupling protein 3 OS=Canis famili... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185546 ID=CN185546; Name=CN185546; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTGAGAAAATCTGGCAACTACCTACATTTTCCCCTTCC
TAGGCATGGCAAATTACTGATTCGGTCTACAAAAACTGGTGTTCAATCAA
AGAATCCTTAAGAACTCAAAAAGAAATGCTGAAGCAATTCATAGCTTCAT
GCTAGCAATGGAAGTATGTAACTAAAATGTAGAATAGGCAAAACAATAAA
ATAGTACCTATAAGGGTGCATTGCGAAGATATCTCCTCTCATAAAAACCA
GTCACTTGGTCAGCCACAGCCCACATAATGGCCTGGCCTGGCGGGATCCT
CATGAGACGGGGCAGCAGTCCTTTCCACAAGGCAAGAAGCCCCTCCTCAG
CATATATTGTTCTGATTGCATGGACCATGCCTTTGTACTTTAACTCACCC
CCACCTCGACTCTGGGCCATCAGCCTTGTCTTGACAACATCAAAAGGGCC
AGTGCATACTGGACCTGCTGTTCCTGCAAGGAATCCCGATATCATGGACT
GCCACGGTTGGAGGACCTTCCCATCACCTTCATGTTTCTTCCACAAGAGT
ACATCAAAAGCATTTTTAGCCGTAAACATGGCAGCTTGGTTTGTCCCATT
GCGCATAACAGTTGGGGCAGCCCCTGCCCAGAGTCCAAAGAGTCCTTCCT
CACGGATGATCATACGAGCACAGTGTATAGGACCCTTGTACTTTAGAAGC
TCAAGACTCAAACCTCTCTGCTGTTGTAGTCTAATTTTCACCACCTCAAA
AGGAGTAACA
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