CN185539

Overview
NameCN185539
Unique NameCN185539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.721e-18
Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = 1
Query:  133 LGLKPHSDGTGYTIVLQDEE--GLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYY 477
            LGL PHSD TG T+++Q  E  GL + KDE+W  +  I  A +V +GD +EIM+NGI+KS  HR V + +KER S+  F+ PE   +IGP   L+ E       N   Y  I +E Y
Sbjct:  223 LGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLVKE-------NGVKYKTIDYEDY 332          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.721e-18
Identity = 52/159 (32.70%), Postives = 87/159 (54.72%), Query Frame = 1
Query:   19 MAKSLKLEENCFLNQF--GNQSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEE--GLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQK 483
            + ++L LE+      F   N   +  + + Y  C  P+L+ GL+ H+D  G  ++ QD++  GLQ+LKD QW  VP +  ++++ +GDQ+E++TNG ++S  HRV+   +  R S+  FY P  +  I P   L+ +E     KN + Y    +E Y K
Sbjct:  132 LCENLGLEKGYLKKAFYGTNGPTFGTKVSNYPPCPNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVITNGKYRSVEHRVIAQTDGTRMSIASFYNPGSDAVIYPAPTLVEKEAEE--KN-QVYPKFVFEDYMK 287          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.721e-18
Identity = 43/115 (37.39%), Postives = 71/115 (61.74%), Query Frame = 1
Query:   82 YQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEE--GLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEE 420
            +  + + Y  C RP+L  GL+ H+D  G  ++ QD+   GLQ+LKD +W  VP ++ ++++ +GDQ+E++TNG +KS +HRVV   +  R S+  FY P  +  I P   L+ +E
Sbjct:  156 FGTKVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDGEWVDVPPMNHSIVINLGDQVEVITNGKYKSVMHRVVAQTDGNRMSLASFYNPGSDAVIFPAPALVEKE 270          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18
Identity = 49/137 (35.77%), Postives = 80/137 (58.39%), Query Frame = 1
Query:   82 YQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEE--GLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVT-SAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQK 483
            +  + + Y  C +PDL+ GL+ H+D  G  ++ QD++  GLQ+LKD  W  VP +  A++V +GDQ+E++TNG +KS +HRV+T ++   R S+  FY P  +  I P   L+ ++     K +  Y    +E Y K
Sbjct:  155 FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGNWIDVPPMRHAIVVNLGDQLEVITNGRYKSVMHRVLTQTSGTGRMSIASFYNPGSDAVIYPAPALVEKDQDEEKKEV--YPKFVFEDYMK 289          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 41/115 (35.65%), Postives = 70/115 (60.87%), Query Frame = 1
Query:   82 YQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEE--GLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEE 420
            +  + + Y  C +P+L+ GL+ H+D  G  ++ QD++  GL VLKD +W  VP +  ++++ +GDQ+E++TNG +KS +HRV+   +  R S+  FY P  +  I P   L+  E
Sbjct:  156 FGTKVSNYPPCPKPELIKGLRAHTDAGGLILLFQDDKVSGLHVLKDGKWVDVPPMHHSIVINLGDQLEVITNGKYKSVMHRVIAQEDGNRMSIASFYNPGNDAVIYPAPALVEGE 270          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 52/153 (33.99%), Postives = 78/153 (50.98%), Query Frame = 1
Query:   52 FLNQFGNQSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHW----EYYQKGQRA 495
            +   F  ++    R N+Y  CQ PDL LG  PH D +  TI+ QD   GLQV  D QW ++    +A +V +GD    ++NGIFKS +HR V + E  R S+  F  P+ +K + P + ++ +         + Y +  W    E+ QK  RA
Sbjct:  213 YFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQDHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKDKVVKPPSDILEK------MKTRKYPDFTWSMFLEFTQKHYRA 359          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 1
Query:   19 MAKSLKLEENCFLNQFGNQSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTS-AEKERFSVVVFYAPELN---KEIGPENGLINEECPRLFK--NMKDYA 456
            ++++L LE N  LN            +YY  C  PDL LG   HSD +  T++L D+ EGLQV ++  WF VP +S A+++ +GD ++++TN  F S  HRV+ + A + R SV  F+   +    +  GP   L++EE P  ++   +KDYA
Sbjct:  199 LSEALGLEPN-HLNDMDCSKGLLMLSHYYPPCPEPDLTLGTSQHSDNSFLTVLLPDQIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVRPNPRMYGPIRELVSEENPPKYRETTIKDYA 350          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.104e-16
Identity = 51/166 (30.72%), Postives = 89/166 (53.61%), Query Frame = 1
Query:   13 KAMAKSLKLEENCFLNQFGNQSQY--QARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEI-GPENGLINEECPRLFKNMKDYANIHWEYYQKGQRAL 498
            K ++  L L+E     + G   +   Q + NYY  C +P+L LG++ H+D +  T +L +   GLQ+  + +W T   +  ++++ +GD +EI++NG +KS +HR + + EK R S  VF  P   K I  P    ++E+ P +F       +I  + ++K Q AL
Sbjct:  189 KVLSLGLGLDEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPNSIVMHIGDTLEILSNGKYKSILHRGMVNKEKVRISWAVFCEPPKEKIILKPLPETVSEDEPAMFPPRTFAEHIQHKLFRKSQEAL 354          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.747e-16
Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   52 FLNQFGNQSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQKGQRA 495
            +  +F  ++    R NYY  C +PDL LG  PH D T  TI+ QD   GLQV  + QW ++    +A +V +GD    ++N  +KS +HR V ++E ER S+  F  P+ ++ + P   L++    R + +     ++  E+ QK  RA
Sbjct:  215 YFREFFEENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQDHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELLDSITSRRYPDFT--WSMFLEFTQKHYRA 361          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.747e-16
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   70 NQSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNM--KDYAN 459
            N   Y    N+Y      D   GL+PH+D  G T+++ +E  GLQV KD+ W  V  I  A++V +GDQ+ +++NG +K+ +H+     EK R S  V  +P  +  +GP   L +E+ P  FK +  KDY +
Sbjct:  149 NGCWYVMNINHYPPYPHSDSFNGLEPHTDINGLTLIITNEIPGLQVFKDDHWIEVEYIPSAIIVNIGDQIMMLSNGKYKNVLHKTTVDKEKTRMSWPVLVSPTYDMVVGPLPELTSEDDPPKFKPIAYKDYVH 281          
The following BLAST results are available for this feature:
BLAST of CN185539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NCS1_COPJA1.721e-1843.59S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
ACCO_PRUMU1.721e-1832.701-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
ACCO_PERAE1.721e-1837.391-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO1_CUCME6.539e-1835.771-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
ACCO3_CUCME8.541e-1835.651-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
GAOX2_ARATH3.245e-1733.99Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
ACCH3_ARATH5.536e-1735.951-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
LDOX_MALDO2.104e-1630.72Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
GAOX1_ARATH2.747e-1632.89Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
FLS_MATIN2.747e-1635.34Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185539 ID=CN185539; Name=CN185539; organism=Citrus sinensis; type=EST; length=670bp
ATGATCACTTCCAAAGCCATGGCAAAGTCATTGAAGTTAGAGGAAAATTG
CTTCCTGAATCAGTTTGGGAATCAATCACAGTATCAAGCGAGGTTTAACT
ATTATGCACATTGTCAGAGACCTGATCTTGTCCTGGGCTTAAAACCCCAT
TCAGATGGAACCGGATACACCATTGTATTGCAGGACGAAGAAGGTCTCCA
AGTCCTCAAAGATGAGCAATGGTTTACAGTACCCAAAATATCTGAAGCTG
TCCTAGTCCTCATGGGTGACCAAATGGAGATAATGACTAATGGAATCTTC
AAGAGCCCAGTGCATAGAGTAGTTACTAGTGCAGAAAAGGAGAGGTTTTC
TGTAGTAGTATTTTATGCACCAGAATTGAACAAGGAGATTGGACCAGAAA
ATGGCTTAATCAACGAGGAATGCCCAAGATTATTCAAGAACATGAAAGAT
TACGCCAATATTCACTGGGAATACTACCAGAAAGGACAGCGAGCACTTCA
CACCGCAAAAGGGTGATATTGTCCTGTAGCATACTGATAGAATAGTCTCA
TGTTCTGTCACTTCTTTATCCTTCCATCTTTCTTTTCCTTCTTCGTTTTG
TGTGGTTGTGAAACTTAATCCTAGAGCTTTTAAATAAACACTACCTTATG
GGTGAAAAAAAAAAAAAAAA
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