CN185539

Overview
NameCN185539
Unique NameCN185539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 46/127 (36.22%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   97 NYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTS-AEKERFSVVVFYAPELN---KEIGPENGLINEECPRLFK--NMKDYA 456
            +Y+  C  PDL  G   HSDG+  T++L D  EGLQV ++  WF VP +  A+++ +GD ++++TN  F S  HRV+ + A + R SV  F+   +    +  GP   L++EE P  ++   ++DYA
Sbjct:  224 HYFPPCPEPDLTFGTSKHSDGSFLTVLLPDNIEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFHTHVKPNPRVYGPIKELVSEENPPKYRETTIRDYA 350          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 46/142 (32.39%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   70 NQSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEE-GLQVLKDEQ-WFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNM--KDYANIHWEYYQK 483
            N +Q   + N+Y  C  PD  +GL  H+D T  TI+ Q+   GLQV +D+  W TVP    +++V +GD   I++NG+FKS +HR   +  + R SV   + P+ + +I P   L++     L++++  K+Y      ++ K
Sbjct:  206 NWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARLSVAFLWGPQSDIKISPVPKLVSPVESPLYQSVTWKEYLRTKATHFNK 347          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   97 NYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKE-------IGPENGLINEECPRLFK--NMKDYANIHW 468
            +YY  C +P+L  G   HSD    TI++QD+  GLQ+L + QW  VP I  A+++ + D ++++TN  FKS  HRV+ +    R SV V +  +   +        GP   LI+EE P ++K   +KD+  I +
Sbjct:  251 HYYPACPQPELTFGTSKHSDSGFLTILMQDQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRF 384          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 42/127 (33.07%), Postives = 71/127 (55.91%), Query Frame = 1
Query:   19 MAKSLKLEENCFLNQFGNQSQY--QARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEI 390
            ++  L LEE     + G   +   Q + NYY  C +P+L LG++ H+D +  T +L +   GLQ+  + +W T   +  ++++ +GD +EI++NG +KS +HR + + EK R S  VF  P   K I
Sbjct:  193 LSLGLGLEEGRLEKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKII 319          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: FL3H_HORVU (Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 42/103 (40.78%), Postives = 58/103 (56.31%), Query Frame = 1
Query:   97 NYYAHCQRPDLVLGLKPHSDGTGYTIVLQD-EEGLQVLKD--EQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGP 396
            N+Y  C +PDL LGLK H+D    T++LQD   GLQ  +D  + W TV  IS A +V +GD    M+NG FK+  H+ V + E  R S+  F  P  +  + P
Sbjct:  203 NFYPRCPQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDGGKNWITVQPISGAFVVNLGDHGHFMSNGRFKNADHQAVVNGESSRLSIATFQNPAPDARVWP 305          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 44/138 (31.88%), Postives = 74/138 (53.62%), Query Frame = 1
Query:   76 SQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEE-GLQVLKDEQ-WFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKD--YANIHWEYY 477
            +Q   + N+Y  C  PD  +GL  H+D T  TI+ Q+   GLQV +D+  W T P +  +++V +GD + I+TNGIF S +HR   +  + RFS+   +        GP + ++    P+L   ++   Y ++ W+ Y
Sbjct:  201 TQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQNNTAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRARVNHVRSRFSMAYLW--------GPPSDIMISPLPKLVDPLQSPLYPSLTWKQY 330          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 41/129 (31.78%), Postives = 69/129 (53.49%), Query Frame = 1
Query:   52 FLNQFGNQSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEG-LQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLF 435
            +  +F  ++    R NYY  CQRP   LG  PH D T  TI+ QD  G L+V  + +W  +     A++V +GD    ++N  ++S +HR V ++   R S+  F  PE++  + P   L+++  PR++
Sbjct:  202 YFRRFFQRNDSIMRLNYYPACQRPLDTLGTGPHCDPTSLTILHQDHVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNSTAPRRSLAFFLCPEMDTVVRPPEELVDDHHPRVY 330          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: FL3H_MATIN (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 43/131 (32.82%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   13 KAMAKSLKLEENCFLNQFGNQSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDE--QWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGP 396
            + +++++ LE+    N   +  Q +   NYY  C +PDL LGLK H+D    T++LQD+  GLQ  +D+   W TV  +  A +V +GD    ++NG FK+  H+ V ++   R S+  F  P     + P
Sbjct:  172 EVLSEAMGLEKESLTNACVDMDQ-KIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDDGNTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSNSSRLSIATFQNPAPEATVYP 301          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: FL3H_DIACA (Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthus caryophyllus GN=FHT PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   97 NYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKD--EQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGP------ENGLINE 417
            NYY  C +PDL LGLK H+D    T++LQD+  GLQ  +D  + W TV  +  A +V +GD    ++NG FK+  H+ V ++E  R S+  F  P  +  + P      EN ++ E
Sbjct:  201 NYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDGGKTWITVQPVPGAFVVNLGDHGHFLSNGRFKNADHQAVVNSECSRLSIATFQNPSPDATVYPLAIREGENSIMEE 316          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: FL3H_ARATH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 43/131 (32.82%), Postives = 71/131 (54.20%), Query Frame = 1
Query:   13 KAMAKSLKLEENCFLNQFGNQSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKD--EQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGP 396
            + +++++ LE+    N   +  Q +   NYY  C +PDL LGLK H+D    T++LQD+  GLQ  +D  + W TV  +  A +V +GD    ++NG FK+  H+ V ++   R S+  F  P  +  + P
Sbjct:  173 EVLSEAMGLEKESLTNACVDMDQ-KIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDNGKTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSNSSRLSIATFQNPAPDATVYP 302          
The following BLAST results are available for this feature:
BLAST of CN185539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ACCH2_ARATH3.967e-1536.221-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3OX1_ARATH6.767e-1532.39Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
DV4H_CATRO6.767e-1535.07Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
LDOX_VITVI4.386e-1433.07Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
FL3H_HORVU4.386e-1440.78Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum... [more]
G3OX2_ARATH5.729e-1431.88Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
GAOX1_ORYSJ9.772e-1431.78Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
FL3H_MATIN1.276e-1332.82Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
FL3H_DIACA1.276e-1337.07Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthu... [more]
FL3H_ARATH1.276e-1332.82Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185539 ID=CN185539; Name=CN185539; organism=Citrus sinensis; type=EST; length=670bp
ATGATCACTTCCAAAGCCATGGCAAAGTCATTGAAGTTAGAGGAAAATTG
CTTCCTGAATCAGTTTGGGAATCAATCACAGTATCAAGCGAGGTTTAACT
ATTATGCACATTGTCAGAGACCTGATCTTGTCCTGGGCTTAAAACCCCAT
TCAGATGGAACCGGATACACCATTGTATTGCAGGACGAAGAAGGTCTCCA
AGTCCTCAAAGATGAGCAATGGTTTACAGTACCCAAAATATCTGAAGCTG
TCCTAGTCCTCATGGGTGACCAAATGGAGATAATGACTAATGGAATCTTC
AAGAGCCCAGTGCATAGAGTAGTTACTAGTGCAGAAAAGGAGAGGTTTTC
TGTAGTAGTATTTTATGCACCAGAATTGAACAAGGAGATTGGACCAGAAA
ATGGCTTAATCAACGAGGAATGCCCAAGATTATTCAAGAACATGAAAGAT
TACGCCAATATTCACTGGGAATACTACCAGAAAGGACAGCGAGCACTTCA
CACCGCAAAAGGGTGATATTGTCCTGTAGCATACTGATAGAATAGTCTCA
TGTTCTGTCACTTCTTTATCCTTCCATCTTTCTTTTCCTTCTTCGTTTTG
TGTGGTTGTGAAACTTAATCCTAGAGCTTTTAAATAAACACTACCTTATG
GGTGAAAAAAAAAAAAAAAA
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