CN185539

Overview
NameCN185539
Unique NameCN185539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 1
Query:   97 NYYAHCQRPDLVLGLKPHSDGTGYTIVLQD-EEGLQVLKD--EQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGP 396
            N+Y  C  P   LGL  H+D   +T VLQ    GLQ+ +   ++W TVP +  A++V +GD  +I+TNG F S  HR V + + +R S+  F  P  + ++ P
Sbjct:  212 NWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAP 314          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 1
Query:   97 NYYAHCQRPDLVLGLKPHSDGTGYTIVLQD-EEGLQVLKD--EQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGP 396
            N+Y  C  P   LGL  H+D   +T VLQ    GLQ+ +   ++W TVP +  A++V +GD  +I+TNG F S  HR V + + +R S+  F  P  + ++ P
Sbjct:  212 NWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAP 314          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 42/125 (33.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   19 MAKSLKLEENCFLNQFGNQSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEI 390
            + K + +    F N F  ++ +  R N Y        V GL PH+D +  TI+ QD+  GL++  + QW +V    EA+ V +GD  + ++NG+++S  HRV++ A  ER S+  F  P L  EI
Sbjct:  174 LGKQVNVSSEYFENIFELENSF-LRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQDQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIERMSIAFFVCPYLETEI 297          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: FNSI_PETCR (Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1
Query:   97 NYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEG-LQVLKD--EQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGP 396
            NYY  C +PDL LG++ H+D    TI+LQD  G LQ  +D  + W TV  +  A +V +GD    ++NG F++  H+ V ++   R S+  F  P  N  + P
Sbjct:  201 NYYPTCPQPDLTLGVRRHTDPGTITILLQDMVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLSNGRFRNADHQAVVNSTSSRLSIATFQNPAQNAIVYP 303          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 40/127 (31.50%), Postives = 71/127 (55.91%), Query Frame = 1
Query:   97 NYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEG-LQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAP---ELNKEIGPENGLINEECPRLFK--NMKDYAN 459
            NYY  C +P+L +G   H+D    TI+LQD+ G LQVL    W  VP    +++V +GD +++++N  + S  HR +++    R S+  F+     + +K  GP   L++E+ P  ++   +KD+ +
Sbjct:  219 NYYPPCPQPELTMGTIQHTDIGFVTILLQDDMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVGSRMSITCFFGESPYQSSKLYGPITELLSEDNPPKYRATTVKDHTS 345          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = 1
Query:   91 RFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQ----WFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGP 396
            + N Y  C  P L +GL PH+D +  TI+ Q    GL++   ++    W  V  I  +++V+MGD   I++NG F+S +HR V +    R S   F  P  N +IGP
Sbjct:  207 QLNSYPVCPDPHLAMGLAPHTDSSLLTILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKTHHRVSAAYFAGPPKNLQIGP 313          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 43/134 (32.09%), Postives = 68/134 (50.75%), Query Frame = 1
Query:   91 RFNYYAHCQRPDL-------VLGLKPHSDGTGYTIVLQDE-EGLQV-LKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNM--KDYAN 459
            R N+Y  C   +        V+G   H+D    +++  +   GLQ+ L D  W +VP    +    +GD +++MTNG FKS  HRV+ + +K R S++ F  P L + I P   LI+ E  RL++     +Y N
Sbjct:  171 RLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCKKSRVSMIYFAGPSLTQRIAPLTCLIDNEDERLYEEFTWSEYKN 304          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 43/134 (32.09%), Postives = 71/134 (52.99%), Query Frame = 1
Query:   91 RFNYYAHCQRPDLV--LGLKPHSDGTGYTIVLQ-DEEGLQV-LKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQ 480
            R N+Y   +   +   +G   H+D    +++   D EGLQ+ +KD  W  V     +  VL+GD +++MTNG FKS  HRVVT+ ++ R S++ F  P L+++I P + L+ ++   L      Y    W  Y+
Sbjct:  181 RMNHYPEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCL------YNEFTWSQYK 308          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 35/117 (29.91%), Postives = 58/117 (49.57%), Query Frame = 1
Query:   97 NYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNM 444
            NYY     P   LGL PH D    T++L     GL++     W  V  +  ++++  G Q+E++TNG  K+  HR  T+  + R SV  F  P  +  +GP    ++E+ P  ++ +
Sbjct:  191 NYYPPSPNPSRTLGLPPHCDRDLMTVLLPGAVPGLEIAYKGGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNFAEPRLSVASFIVPADDCVVGPAEEFVSEDNPPRYRTL 307          
The following BLAST results are available for this feature:
BLAST of CN185539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
G3O22_WHEAT4.105e-1236.89Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT4.105e-1236.89Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
G2OX7_ARATH5.362e-1233.60Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
FNSI_PETCR5.362e-1236.89Flavone synthase OS=Petroselinum crispum GN=FNSI P... [more]
ACCH3_SOLLC9.146e-1231.501-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3OX3_ARATH1.560e-1135.51Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX1_ARATH2.038e-1132.09Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G2OX3_ARATH2.661e-1132.09Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
IDS2_HORVU7.743e-1129.91Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185539 ID=CN185539; Name=CN185539; organism=Citrus sinensis; type=EST; length=670bp
ATGATCACTTCCAAAGCCATGGCAAAGTCATTGAAGTTAGAGGAAAATTG
CTTCCTGAATCAGTTTGGGAATCAATCACAGTATCAAGCGAGGTTTAACT
ATTATGCACATTGTCAGAGACCTGATCTTGTCCTGGGCTTAAAACCCCAT
TCAGATGGAACCGGATACACCATTGTATTGCAGGACGAAGAAGGTCTCCA
AGTCCTCAAAGATGAGCAATGGTTTACAGTACCCAAAATATCTGAAGCTG
TCCTAGTCCTCATGGGTGACCAAATGGAGATAATGACTAATGGAATCTTC
AAGAGCCCAGTGCATAGAGTAGTTACTAGTGCAGAAAAGGAGAGGTTTTC
TGTAGTAGTATTTTATGCACCAGAATTGAACAAGGAGATTGGACCAGAAA
ATGGCTTAATCAACGAGGAATGCCCAAGATTATTCAAGAACATGAAAGAT
TACGCCAATATTCACTGGGAATACTACCAGAAAGGACAGCGAGCACTTCA
CACCGCAAAAGGGTGATATTGTCCTGTAGCATACTGATAGAATAGTCTCA
TGTTCTGTCACTTCTTTATCCTTCCATCTTTCTTTTCCTTCTTCGTTTTG
TGTGGTTGTGAAACTTAATCCTAGAGCTTTTAAATAAACACTACCTTATG
GGTGAAAAAAAAAAAAAAAA
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