CN185528
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13 Identity = 46/168 (27.38%), Postives = 84/168 (50.00%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNLDTAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG 216
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13 Identity = 46/168 (27.38%), Postives = 85/168 (50.60%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L + + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 212
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13 Identity = 48/168 (28.57%), Postives = 85/168 (50.60%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 SL++G+L P + E+ + IF G S +V R+ T S GY ++ F++ A ER ++ N + + + R+ W+ RR G IF+ +L A + + L +TF A + ++ KV T+ T S GYGFV + ++ +NG+L + + + +G Sbjct: 48 SLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLI--RNRPCRIMWSQRDPALRRTGQG---NIFIKNLDAGIDNKALHDTF-AAFGNILSCKVATNET--GSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVG 207
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12 Identity = 48/169 (28.40%), Postives = 87/169 (51.48%), Query Frame = 2 Query: 89 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 592 +A D D G +L + L M + + S+F GE S K+IR+K S GYGF+ +V+ AER + T NG ++ S + ++++A + + D +++ L +T +++ F + + + ++V+ D+TTG S+G F+RF SE ++T G Sbjct: 9 MAEDCRGDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12 Identity = 53/182 (29.12%), Postives = 90/182 (49.45%), Query Frame = 2 Query: 95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG------PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 P+ S + L++G+L + +A +F G +VI N++T+ S G+GF+ S AE ++ FN + N RL A + + P F ++VG+L DV + L++ F + + V A+VV DR TGRS+G+GFV D E +++ ++G R +R+ Sbjct: 144 PEPSEEA--KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDL-----NGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12 Identity = 46/168 (27.38%), Postives = 85/168 (50.60%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 SL++G+L P + E+ + IF G S +V R+ T S GY ++ +++ A ER L+ N + + Q+ R+ W+ R+ G IF+ +L + + L +TF A + + KV TD G+S+G+ FV + ++ +NG+L + + + +G Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKG--QSCRIMWSQRDPALRKTGQG---NIFIKNLDQSIDNKALHDTF-AAFGDILSCKVGTDE-NGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVG 207
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12 Identity = 44/168 (26.19%), Postives = 84/168 (50.00%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 SL++G+L P + E+ + +F G S +V R+ T S GY ++ + S + E+ L+ N T + + R+ W+ R+ G +F+ +L + + L +TF A + ++ KV D G SKGYGFV + + +++ +N +L + + + +G Sbjct: 66 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNLDVAIDNKALHDTF-AAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVG 226
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12 Identity = 45/167 (26.95%), Postives = 86/167 (51.50%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 ++++G L + E + +F G V+ + +++ T +GYGF+EF+S A+ ++ N ++ + R+N A+ A + D G + IF+G+L ++ + +L +TF A ++ K++ D TG SKGY F+ F ++ MNG RP+ + Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYG--KPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 174
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12 Identity = 45/167 (26.95%), Postives = 86/167 (51.50%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 ++++G L + E + +F G V+ + +++ T +GYGF+EF+S A+ ++ N ++ + R+N A+ A + D G + IF+G+L ++ + +L +TF A ++ K++ D TG SKGY F+ F ++ MNG RP+ + Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYG--KPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 174
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12 Identity = 45/167 (26.95%), Postives = 86/167 (51.50%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 ++++G L + E + +F G V+ + +++ T +GYGF+EF+S A+ ++ N ++ + R+N A+ A + D G + IF+G+L ++ + +L +TF A ++ K++ D TG SKGY F+ F ++ MNG RP+ + Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYG--KPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 174 The following BLAST results are available for this feature:
BLAST of CN185528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 107
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185528 ID=CN185528; Name=CN185528; organism=Citrus sinensis; type=EST; length=625bpback to top |