CN185484

Overview
NameCN185484
Unique NameCN185484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185484_ssr588 microsatellite CN185484_ssr588:588..597. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2486 contig Csv1_Contig2486:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC_ASPTN (Pyruvate decarboxylase OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pdcA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 61/150 (40.67%), Postives = 82/150 (54.67%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKD---KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKEL 439
            P N     Q+ +GSIG+SVGA  G A AAK+   +R +  +GDGS Q+T QEISTMIR     I+F+I N GYTIE  IH  D  YN I+ WD  GL   +   + K    +V++ DELT+            L  +E+ + +DD    L
Sbjct:  409 PANVTAISQVLWGSIGYSVGACQGAALAAKEQNNRRTVLFVGDGSLQLTVQEISTMIRNNLNPIVFVICNQGYTIERFIHGWDEAYNDIQPWDIKGL-PVVFGAKDKYKGYRVKTRDELTKLFANDEFNSVPCLQLVELHMPRDDAPASL 557          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC_EMENI (Pyruvate decarboxylase OS=Emericella nidulans GN=pdcA PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 58/113 (51.33%), Postives = 72/113 (63.72%), Query Frame = 2
Query:   29 QMQYGSIGWSVGATLGYAQAAKD---KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTE 352
            Q+ +GSIG+SVGA  G A AAK+   +R +  +GDGS Q+T QEISTMIR     IIF+I N GYTIE  IH  D  YN I+ WD  GL  A   G+G+    KV + DELT+
Sbjct:  416 QVLWGSIGYSVGACQGAALAAKEQGNRRTVLWVGDGSLQLTLQEISTMIRNNLNPIIFVICNEGYTIERFIHGWDESYNDIQTWDIKGLPVAF-GGKGRYKGYKVTTRDELTK 527          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC_ASPFU (Pyruvate decarboxylase OS=Aspergillus fumigatus GN=pdcA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 59/143 (41.26%), Postives = 84/143 (58.74%), Query Frame = 2
Query:   29 QMQYGSIGWSVGATLGYAQAAKD---KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTA-KVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKEL 439
            Q+ +GSIG+SVGA  G A AAK+   +R I  +GDGS Q+T QEISTMIR     IIF+I N GYTIE  IH  +  YN I+ WDY  L  A   G GK +   +V+++D++ +  +         L  +E+++ ++D    L
Sbjct:  417 QVLWGSIGYSVGACQGAALAAKEQGNRRTILFVGDGSIQLTLQEISTMIRNKLNPIIFVICNEGYTIERYIHGWEASYNDIQQWDYKSLPVAF--GAGKDYKGYRVKTKDDMIKLFENTEFASAPFLQLVELYMPREDAPSAL 557          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC_ASPOR (Pyruvate decarboxylase OS=Aspergillus oryzae GN=pdcA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 2
Query:   29 QMQYGSIGWSVGATLGYAQAAKD--KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKEL 439
            Q+ +GSIG+SVGA  G A AAK+  +R +  +GDGSFQ+T QE+STMIR     IIF+I N GYTIE  IH  +  YN I+ WD+  +  A    + K    KV + DEL E            L  +E+ + +DD    L
Sbjct:  417 QVLWGSIGYSVGACQGAALAAKEQGRRTVLFVGDGSFQLTLQEVSTMIRNNLNPIIFVICNEGYTIERYIHGWEAVYNDIQPWDFLNIPVAF-GAKDKYKGYKVTTRDELRELFANEEFASAPCLQLVELHMPRDDCPASL 556          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC1_KLULA (Pyruvate decarboxylase OS=Kluyveromyces lactis GN=PDC1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 61/164 (37.20%), Postives = 86/164 (52.44%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKD----KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSR 478
            P N     Q+ +GSIG++ GATLG A AA++    KRVI  IGDGS Q+T QEISTMIR G +  +F++NN GYTIE  IH     YN I+NW +  L+     G       +V +  E  +       +    +  IEV +   D    L++     +A N++
Sbjct:  401 PNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIERLIHGETAQYNCIQNWQHLELLPTF--GAKDYEAVRVSTTGEWNKLTTDEKFQDNTRIRLIEVMLPTMDAPSNLVKQAQLTAATNAK 562          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC1_CANGA (Pyruvate decarboxylase OS=Candida glabrata GN=PDC1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 61/164 (37.20%), Postives = 87/164 (53.05%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKD----KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSR 478
            P N     Q+ +GSIG++ GA LG A AA++    KRVI  IGDGS Q+T QEISTMIR G +  +F++NN GYTIE  IH     YN I+NWD+  L+     G       +V +  E  +  +     +   +  IEV +   D    L+E     ++ N++
Sbjct:  401 PNNAYGISQVLWGSIGFTTGACLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIERLIHGEKAGYNDIQNWDHLALLPTF--GAKDYENHRVATTGEWDKLTQDKEFNKNSKIRMIEVMLPVMDAPTSLIEQAKLTASINAK 562          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC4_SCHPO (Putative pyruvate decarboxylase C3G9.11c OS=Schizosaccharomyces pombe GN=SPAC3G9.11c PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 62/166 (37.35%), Postives = 82/166 (49.40%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKD-----KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIK-NWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSR 478
            P+ C    Q+ +GSIGWSVGA  G     KD     +R I  +GDGS  +T QEIS  IR G   IIF+INN GYTIE  IH     YN I   WDY  L+     G     +  + SE EL +  K     + D +  +EV +   D  + L+E     ++ N +
Sbjct:  407 PKGCQNLSQVLWGSIGWSVGAMFGATLGIKDSDAPHRRSILIVGDGSLHLTVQEISATIRNGLTPIIFVINNKGYTIERLIHGLHAVYNDINTEWDYQNLLKGY--GAKNSRSYNIHSEKELLDLFKDEEFGKADVIQLVEVHMPVLDAPRVLIEQAKLTASLNKQ 570          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: KDC_MYCPA (Alpha-keto-acid decarboxylase OS=Mycobacterium paratuberculosis GN=kdc PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 53/149 (35.57%), Postives = 85/149 (57.05%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLE 445
            P+   +  Q  +GSIG+++ A LG A A  D+R +  IGDG+ Q+T QE+ T  R G   +I ++NN GYT+E  IH    PYN I  W +T + NA+  G  +    +V++  EL +A+ TA    +D +  +EV + + +  + L+E
Sbjct:  405 PQGVTFIGQPLWGSIGYTLPAALGAAVAHPDRRTVLLIGDGAAQLTVQELGTFAREGLSPVIVVVNNDGYTVERAIHGETAPYNDIVGWKWTEVPNAL--GVTEHLAFRVQTYGELDDAL-TAAARHQDRMVLVEVVLPRLEIPRLLVE 550          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC1_KLUMA (Pyruvate decarboxylase OS=Kluyveromyces marxianus GN=PDC1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 57/156 (36.54%), Postives = 85/156 (54.49%), Query Frame = 2
Query:   29 QMQYGSIGWSVGATLGYAQAAKD----KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSR 478
            Q+ +GSIG++ GATLG A AA++    KRVI  IGDGS Q+T QEISTMIR G +  +F++NN GYTIE  IH     YN I++W +  L+     G       +V +  E  +       ++   +  IEV +   D    L++     ++ N++
Sbjct:  409 QVLWGSIGFTGGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIERLIHGETAQYNCIQSWKHLDLLPTF--GAKDYEAVRVATTGEWNKLTTDKKFQENSKIRLIEVMLPVMDAPSNLVKQAQLTASINAK 562          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC_HANUV (Pyruvate decarboxylase OS=Hanseniaspora uvarum GN=PDC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 58/157 (36.94%), Postives = 88/157 (56.05%), Query Frame = 2
Query:   29 QMQYGSIGWSVGATLGYAQAAKD----KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGP---YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSR 478
            Q+ +GSIG+SVGA +G   AA++    KRVI  +GDGS Q+T QEI+ +IR G +  IF++NN GYTIE  IH GP   YN+I+NW    L    + G        V++  E  +       ++  ++  IEVF+ + D    L+   +  +A N++
Sbjct:  409 QVLWGSIGYSVGAMVGATFAAEELDKAKRVILFVGDGSLQLTVQEIACLIRWGLKPYIFVLNNNGYTIEKLIH-GPTAQYNMIQNWKQ--LRYLTNFGATDYEAIPVKTVGEWKKLTADPAFKKNSTIRLIEVFLPEMDAPSSLVAQANLTAAINAK 562          
The following BLAST results are available for this feature:
BLAST of CN185484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
PDC_ASPTN8.638e-1940.67Pyruvate decarboxylase OS=Aspergillus terreus (str... [more]
PDC_EMENI1.924e-1851.33Pyruvate decarboxylase OS=Emericella nidulans GN=p... [more]
PDC_ASPFU1.924e-1841.26Pyruvate decarboxylase OS=Aspergillus fumigatus GN... [more]
PDC_ASPOR3.282e-1841.84Pyruvate decarboxylase OS=Aspergillus oryzae GN=pd... [more]
PDC1_KLULA3.282e-1837.20Pyruvate decarboxylase OS=Kluyveromyces lactis GN=... [more]
PDC1_CANGA4.287e-1837.20Pyruvate decarboxylase OS=Candida glabrata GN=PDC1... [more]
PDC4_SCHPO5.599e-1837.35Putative pyruvate decarboxylase C3G9.11c OS=Schizo... [more]
KDC_MYCPA2.779e-1735.57Alpha-keto-acid decarboxylase OS=Mycobacterium par... [more]
PDC1_KLUMA4.740e-1736.54Pyruvate decarboxylase OS=Kluyveromyces marxianus ... [more]
PDC_HANUV1.056e-1636.94Pyruvate decarboxylase OS=Hanseniaspora uvarum GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185484 ID=CN185484; Name=CN185484; organism=Citrus sinensis; type=EST; length=709bp
GCGGCCCGAGAATTGTGGATATGAATTTCAGATGCAGTATGGATCCATTG
GCTGGTCAGTTGGTGCCACCCTAGGATATGCTCAGGCTGCTAAAGATAAG
CGTGTGATTGCTTGCATTGGTGATGGAAGTTTCCAGGTAACTGCTCAGGA
GATATCAACGATGATTCGATGTGGACAAAGGAGCATCATATTCCTTATCA
ACAATGGCGGGTATACAATTGAAGTAGAGATTCATGATGGGCCTTACAAT
GTGATTAAGAACTGGGATTATACTGGCCTGGTAAATGCCATCCACAATGG
AGAAGGAAAATGCTGGACTGCCAAGGTGCGGAGTGAAGATGAACTAACAG
AAGCAATGAAGACAGCTACTGGAGAACAAAAAGATTCTCTATGTTTTATC
GAAGTATTTGTGCACAAGGATGACACCAGCAAAGAGCTGCTGGAGTGGGG
ATCCAGGGTTTCTGCAGCCAACAGCCGCCCTCCAAATCCTCAATAGCACT
TTGAAGTGTTGAGGATTTTGAGTTTCTGTTATTTCAACTGCAGTATTCTT
GGCCTATATCCTAAAACATGTATCAAAGCTAGAAATAAGAGAGAGAGGAT
TGTTTGATTTAGATGGTTTCCCACCTATCTGTTGGCAGCGATCTGGTTTC
TGTTGTGATTATGCATTTGTTGTTATCTGTTGTGATTATGCATTTGTTGT
TATGTACAT
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