CN185484

Overview
NameCN185484
Unique NameCN185484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185484_ssr588 microsatellite CN185484_ssr588:588..597. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2486 contig Csv1_Contig2486:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: KDC_MYCA1 (Alpha-keto-acid decarboxylase OS=Mycobacterium avium (strain 104) GN=kdc PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 52/149 (34.90%), Postives = 84/149 (56.38%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLE 445
            P+   +  Q  +GSIG+++ A LG A A  D+R +  IGDG+ Q+T QE+ T  R G   +I ++NN GYT+E  IH    PYN I  W +T + N++  G       +V++  EL +A+ TA    +D +  +EV + + +  + L+E
Sbjct:  405 PQGVTFIGQPLWGSIGYTLPAALGAAVAHPDRRTVLLIGDGAAQLTVQELGTFAREGLSPVIVVVNNDGYTVERAIHGETAPYNDIVGWKWTEVPNSL--GVTDHLAFRVQTYGELDDAL-TAAARHQDRMVLVEVVLPRLEIPRLLVE 550          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: KDC_MYCLE (Alpha-keto-acid decarboxylase OS=Mycobacterium leprae GN=kdc PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 424
            P    +  Q  +GSIG+++ A LG   A +++R +  +GDG+ Q+T QE+ +  R G   +I ++NN GYTIE  IH    PYN I  W +T +  A+  G     + +  +  EL EA   A  E KD + F+EV V K D
Sbjct:  403 PRGVTFIGQPLWGSIGYTLPAALGAGLAHRNRRTVLLLGDGAAQLTIQELGSFYREGLSPVIVVVNNDGYTIERAIHGATAPYNNIARWRWTDIPGAL--GVANHSSFRAETYGELDEAFAVA-AELKDQMVFVEVIVPKLD 541          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: KDC_MYCS2 (Alpha-keto-acid decarboxylase OS=Mycobacterium smegmatis GN=kdc PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = 2
Query:   29 QMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSR 478
            Q  + SIG+++ A LG   A +D+R +  IGDG+ Q+T QE+    R G   ++ ++NN GYT+E  IH     YN I  W +T L  A+  G     T +  +  EL +A+ T   E +D + F+EV + + D    L E     SAAN++
Sbjct:  407 QPLWASIGYTLPAALGAGLADRDRRTVLLIGDGAAQLTVQELGAFGREGLTPVVVVVNNNGYTVERAIHGVTARYNDITAWRWTELPAAL--GVPDALTFRCATYGELDDAL-TVAAETQDRMVFVEVMLERMDIPPLLGELAQSASAANAK 555          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: DCIP_ENTCL (Indole-3-pyruvate decarboxylase OS=Enterobacter cloacae GN=ipdC PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 49/143 (34.27%), Postives = 82/143 (57.34%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIH-NGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 424
            P +  +  Q  +GSIG+++ A  G   A  ++RVI   GDG+ Q+T QE+ +M+R  Q  II ++NN GYT+E  IH  +  YN I  W++T +  A+  + + +CW  +V   ++L + ++     ++ SL  IEV + K D
Sbjct:  396 PADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECW--RVSEAEQLADVLEKVAHHERLSL--IEVMLPKAD 534          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: KDC_MYCTU (Alpha-keto-acid decarboxylase OS=Mycobacterium tuberculosis GN=kdc PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 406
            P+   +  Q  +GSIG+++ A +G A A  D+R +  IGDG+ Q+T QE+ T  R G   +I ++NN GYT+E  IH    PYN I +W++T L +A+  G       + ++  +L +A+ T    ++D +  +EV
Sbjct:  407 PQGVTFIGQPLWGSIGYTLPAAVGAAVAHPDRRTVLLIGDGAAQLTVQELGTFSREGLSPVIVVVNNDGYTVERAIHGETAPYNDIVSWNWTELPSAL--GVTNHLAFRAQTYGQLDDAL-TVAAARRDRMVLVEV 539          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: KDC_MYCTA (Alpha-keto-acid decarboxylase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=kdc PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 406
            P+   +  Q  +GSIG+++ A +G A A  D+R +  IGDG+ Q+T QE+ T  R G   +I ++NN GYT+E  IH    PYN I +W++T L +A+  G       + ++  +L +A+ T    ++D +  +EV
Sbjct:  407 PQGVTFIGQPLWGSIGYTLPAAVGAAVAHPDRRTVLLIGDGAAQLTVQELGTFSREGLSPVIVVVNNDGYTVERAIHGETAPYNDIVSWNWTELPSAL--GVTNHLAFRAQTYGQLDDAL-TVAAARRDRMVLVEV 539          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: KDC_MYCBP (Alpha-keto-acid decarboxylase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=kdc PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 406
            P+   +  Q  +GSIG+++ A +G A A  D+R +  IGDG+ Q+T QE+ T  R G   +I ++NN GYT+E  IH    PYN I +W++T L +A+  G       + ++  +L +A+ T    ++D +  +EV
Sbjct:  407 PQGVTFIGQPLWGSIGYTLPAAVGAAVAHPDRRTVLLIGDGAAQLTVQELGTFSREGLSPVIVVVNNDGYTVERAIHGETAPYNDIVSWNWTELPSAL--GVTNHLAFRAQTYGQLDDAL-TVAAARRDRMVLVEV 539          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: KDC_MYCBO (Alpha-keto-acid decarboxylase OS=Mycobacterium bovis GN=kdc PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 406
            P+   +  Q  +GSIG+++ A +G A A  D+R +  IGDG+ Q+T QE+ T  R G   +I ++NN GYT+E  IH    PYN I +W++T L +A+  G       + ++  +L +A+ T    ++D +  +EV
Sbjct:  407 PQGVTFIGQPLWGSIGYTLPAAVGAAVAHPDRRTVLLIGDGAAQLTVQELGTFSREGLSPVIVVVNNDGYTVERAIHGETAPYNDIVSWNWTELPSAL--GVTNHLAFRAQTYGQLDDAL-TVAAARRDRMVLVEV 539          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: KDC_MYCUA (Alpha-keto-acid decarboxylase OS=Mycobacterium ulcerans (strain Agy99) GN=kdc PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 424
            P+   +  Q  +GSIG+++ A LG A A  D+R +  IGDG+ Q+T QE+    R G   +I ++NN GYT+E  IH     YN I +W +T +  A+  G       +  +  EL +A+ TA  EQ+D +  +E  + + D
Sbjct:  407 PQGVTFIGQPLWGSIGYTLPAALGAAVAHPDRRTVLLIGDGAAQLTVQELGIFSREGLSPVIVVVNNDGYTVERAIHGETATYNDIVSWRWTDVPGAL--GVTNHLAMRAENYGELDDAL-TAAAEQQDRMVVVEAVLPRLD 545          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC1_SCHPO (Putative pyruvate decarboxylase C13A11.06 OS=Schizosaccharomyces pombe GN=SPAC13A11.06 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 54/158 (34.18%), Postives = 75/158 (47.47%), Query Frame = 2
Query:   29 QMQYGSIGWSVGATLGYAQAAKD-----KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIK-NWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSR 478
            Q+ +GSIG+SVGA  G   A  D     +R I  +GDGS Q+T  EIST IR   + IIF+INN GYTIE  IH     YN I   W Y  +       E    T  V++  ++ +          D +  +E+ +   D  + L+E     S  N +
Sbjct:  414 QVLWGSIGYSVGAMFGAVLAVHDSKEPDRRTILVVGDGSLQLTITEISTCIRHNLKPIIFIINNDGYTIERLIHGLHASYNEINTKWGYQQIPKFFGAAENHFRTYCVKTPTDVEKLFSDKEFANADVIQVVELVMPMLDAPRVLVEQAKLTSKINKQ 571          
The following BLAST results are available for this feature:
BLAST of CN185484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
KDC_MYCA11.056e-1634.90Alpha-keto-acid decarboxylase OS=Mycobacterium avi... [more]
KDC_MYCLE3.072e-1636.62Alpha-keto-acid decarboxylase OS=Mycobacterium lep... [more]
KDC_MYCS25.240e-1634.87Alpha-keto-acid decarboxylase OS=Mycobacterium sme... [more]
DCIP_ENTCL1.167e-1534.27Indole-3-pyruvate decarboxylase OS=Enterobacter cl... [more]
KDC_MYCTU4.436e-1534.56Alpha-keto-acid decarboxylase OS=Mycobacterium tub... [more]
KDC_MYCTA4.436e-1534.56Alpha-keto-acid decarboxylase OS=Mycobacterium tub... [more]
KDC_MYCBP4.436e-1534.56Alpha-keto-acid decarboxylase OS=Mycobacterium bov... [more]
KDC_MYCBO4.436e-1534.56Alpha-keto-acid decarboxylase OS=Mycobacterium bov... [more]
KDC_MYCUA1.291e-1434.51Alpha-keto-acid decarboxylase OS=Mycobacterium ulc... [more]
PDC1_SCHPO1.427e-1334.18Putative pyruvate decarboxylase C13A11.06 OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185484 ID=CN185484; Name=CN185484; organism=Citrus sinensis; type=EST; length=709bp
GCGGCCCGAGAATTGTGGATATGAATTTCAGATGCAGTATGGATCCATTG
GCTGGTCAGTTGGTGCCACCCTAGGATATGCTCAGGCTGCTAAAGATAAG
CGTGTGATTGCTTGCATTGGTGATGGAAGTTTCCAGGTAACTGCTCAGGA
GATATCAACGATGATTCGATGTGGACAAAGGAGCATCATATTCCTTATCA
ACAATGGCGGGTATACAATTGAAGTAGAGATTCATGATGGGCCTTACAAT
GTGATTAAGAACTGGGATTATACTGGCCTGGTAAATGCCATCCACAATGG
AGAAGGAAAATGCTGGACTGCCAAGGTGCGGAGTGAAGATGAACTAACAG
AAGCAATGAAGACAGCTACTGGAGAACAAAAAGATTCTCTATGTTTTATC
GAAGTATTTGTGCACAAGGATGACACCAGCAAAGAGCTGCTGGAGTGGGG
ATCCAGGGTTTCTGCAGCCAACAGCCGCCCTCCAAATCCTCAATAGCACT
TTGAAGTGTTGAGGATTTTGAGTTTCTGTTATTTCAACTGCAGTATTCTT
GGCCTATATCCTAAAACATGTATCAAAGCTAGAAATAAGAGAGAGAGGAT
TGTTTGATTTAGATGGTTTCCCACCTATCTGTTGGCAGCGATCTGGTTTC
TGTTGTGATTATGCATTTGTTGTTATCTGTTGTGATTATGCATTTGTTGT
TATGTACAT
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