CN185484

Overview
NameCN185484
Unique NameCN185484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185484_ssr588 microsatellite CN185484_ssr588:588..597. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2486 contig Csv1_Contig2486:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: THI3_YEAST (Thiamine metabolism regulatory protein THI3 OS=Saccharomyces cerevisiae GN=THI3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 50/152 (32.89%), Postives = 79/152 (51.97%), Query Frame = 2
Query:   29 QMQYGSIGWSVGATLGYAQAA----KDK------RVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH---DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLE 445
            Q  +GS+G+++GA LG   A     KDK      RVI  +GDG+FQ+T QE+ST+++ G    IF++NN GY+++  +H   D  Y  I+ W+Y GL+     G     T K+ +  E    +        D +  IE+ +   D  + LL+
Sbjct:  420 QALWGSVGYTMGACLGAEFAVQEINKDKFPATKHRVILFMGDGAFQLTVQELSTIVKWGLTPYIFVMNNQGYSVDRFLHHRSDASYYDIQPWNYLGLLRVF--GCTNYETKKIITVGEFRSMISDPNFATNDKIRMIEIMLPPRDVPQALLD 569          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC_ASPPA (Pyruvate decarboxylase OS=Aspergillus parasiticus GN=pdcA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 55/150 (36.67%), Postives = 74/150 (49.33%), Query Frame = 2
Query:   44 SIGWSVGATLGYAQAAKD------------KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGPYNVIKNWDY---TGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELL 442
            SIG+ + A LG + A +D             R I  IGDGSFQ+T QE+ST+I      IIFLINN GYTIE  IH  +  YN +  W Y        A  +GE K  T +VR+  +L   +  +       L  +EVF+ + D    L+
Sbjct:  412 SIGYMLPAALGASHAQRDLVASDQYHSLSNPRTILFIGDGSFQMTVQELSTIIHQKLNVIIFLINNDGYTIERCIHGRNQAYNDVAPWRYLKAAEFFGADQDGEYKASTWEVRTWADLDRVLNDSQLADGKGLRMVEVFMERLDAPDVLM 561          
The following BLAST results are available for this feature:
BLAST of CN185484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
THI3_YEAST2.434e-1332.89Thiamine metabolism regulatory protein THI3 OS=Sac... [more]
PDC_ASPPA4.152e-1336.67Pyruvate decarboxylase OS=Aspergillus parasiticus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185484 ID=CN185484; Name=CN185484; organism=Citrus sinensis; type=EST; length=709bp
GCGGCCCGAGAATTGTGGATATGAATTTCAGATGCAGTATGGATCCATTG
GCTGGTCAGTTGGTGCCACCCTAGGATATGCTCAGGCTGCTAAAGATAAG
CGTGTGATTGCTTGCATTGGTGATGGAAGTTTCCAGGTAACTGCTCAGGA
GATATCAACGATGATTCGATGTGGACAAAGGAGCATCATATTCCTTATCA
ACAATGGCGGGTATACAATTGAAGTAGAGATTCATGATGGGCCTTACAAT
GTGATTAAGAACTGGGATTATACTGGCCTGGTAAATGCCATCCACAATGG
AGAAGGAAAATGCTGGACTGCCAAGGTGCGGAGTGAAGATGAACTAACAG
AAGCAATGAAGACAGCTACTGGAGAACAAAAAGATTCTCTATGTTTTATC
GAAGTATTTGTGCACAAGGATGACACCAGCAAAGAGCTGCTGGAGTGGGG
ATCCAGGGTTTCTGCAGCCAACAGCCGCCCTCCAAATCCTCAATAGCACT
TTGAAGTGTTGAGGATTTTGAGTTTCTGTTATTTCAACTGCAGTATTCTT
GGCCTATATCCTAAAACATGTATCAAAGCTAGAAATAAGAGAGAGAGGAT
TGTTTGATTTAGATGGTTTCCCACCTATCTGTTGGCAGCGATCTGGTTTC
TGTTGTGATTATGCATTTGTTGTTATCTGTTGTGATTATGCATTTGTTGT
TATGTACAT
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