CN185478

Overview
NameCN185478
Unique NameCN185478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig760 contig Csv1_Contig760:869..1610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJA1_BOVIN (DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.998e-29
Identity = 66/142 (46.48%), Postives = 94/142 (66.20%), Query Frame = -2
Query:  317 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 736
            GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F V+FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  237 GDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 374          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNAJ1_CERAE (DnaJ homolog subfamily A member 1 OS=Cercopithecus aethiops GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.609e-29
Identity = 65/142 (45.77%), Postives = 94/142 (66.20%), Query Frame = -2
Query:  317 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 736
            GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F ++FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  237 GDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKINFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 374          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJA2_HUMAN (DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.450e-29
Identity = 62/134 (46.27%), Postives = 88/134 (65.67%), Query Frame = -2
Query:  356 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 736
            GDIV +LQ+KEH  F+R G+DL + + + L EALCGFQF   HLDGRQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V FPE+  ++PD+   LE +LP R  V     +  ++EL E + T
Sbjct:  246 GDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNIIGETEEVELQEFDST 379          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJA2_BOVIN (DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.591e-29
Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = -2
Query:  356 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 736
            GDIV +LQ+KEH  F+R G+DL + + + L EALCGFQF   HLDGRQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V FPE+  ++PD+   LE +LP R  V        ++EL E + T
Sbjct:  246 GDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNIIGDTEEVELQEFDST 379          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJA2_MOUSE (DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.209e-28
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = -2
Query:  356 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 736
            GDIV +LQ+KEH  F+R G+DL + + + L EALCGFQF   HLD RQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V FPE+  ++PD+   LE +LP R  V     +  ++EL E + T
Sbjct:  246 GDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNVIGETEEVELQEFDST 379          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJA2_RAT (DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 60/134 (44.78%), Postives = 86/134 (64.18%), Query Frame = -2
Query:  356 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 736
            GDIV  +Q+KEH  F+R G+DL + + + L EALCGFQF   HLD RQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V FPE+  ++PD+   LE +LP R  V     +  ++EL E + T
Sbjct:  246 GDIVLFVQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNVIGETEEVELQEFDST 379          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJA4_MOUSE (DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.985e-25
Identity = 62/143 (43.36%), Postives = 91/143 (63.64%), Query Frame = -2
Query:  314 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 736
            GD++ VL QK+H  F+R+G DL ++  + L+EALCGF+  I  LD R L+I S+ GEV+K    K I +EGMP+Y+ P  +G + I F V FPE   LS ++   LE +LPPR  V++TD ++D+ E   L + N  E+  R+
Sbjct:  238 GDVIIVLDQKDHSVFQRRGQDLIMKMKIQLSEALCGFKKTIKTLDDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFLVVFPEKQWLSQEKLPQLEALLPPRQKVRITD-DMDQVE---LKEFNPNEQSWRQ 376          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJA4_HUMAN (DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.685e-25
Identity = 58/127 (45.67%), Postives = 84/127 (66.14%), Query Frame = -2
Query:  362 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECE 736
            GD++ VL QK+H  F+R+G DL ++  + L+EALCGF+  I  LD R L+I S+ GEV+K    + + DEGMP+Y+ P  +G L I F V FPE   LS ++   LE +LPPR  V++TD ++D+ E
Sbjct:  238 GDVIIVLDQKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKTLDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFLVIFPEKHWLSLEKLPQLEALLPPRQKVRITD-DMDQVE 363          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: MAS5_SCHPO (Mitochondrial protein import protein mas5 OS=Schizosaccharomyces pombe GN=SPBC1734.11 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.254e-23
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = -2
Query:  404 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPR 742
            + GD++FV+ QKEHP+FKR GD LF E  + L  AL G Q V+ HLD R L I   PGE ++P++ K +  +GM + QR    G LYI F VDFPE    +P+Q  +LE  LPPR
Sbjct:  237 IPGDVIFVIDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGECIRPNELKVLPGQGM-LSQRHHQPGNLYIRFHVDFPEPNFATPEQLALLEKALPPR 350          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: MAS5_YEAST (Mitochondrial protein import protein MAS5 OS=Saccharomyces cerevisiae GN=YDJ1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = -2
Query:  365 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSVQL-TDMELDEC 742
            + GD+VF++ ++ H  FKR GDDL  E  + L  A+ G +F + H+ G  L +   PGEV+ P   K I  +GMP+  +    G L I F++ FPE+   S +  K LE +LPPR    +     +DEC
Sbjct:  243 IPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI-PKYGGYGNLIIKFTIKFPENHFTSEENLKKLEEILPPRIVPAIPKKATVDEC 370          
The following BLAST results are available for this feature:
BLAST of CN185478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
DNJA1_BOVIN1.998e-2946.48DnaJ homolog subfamily A member 1 OS=Bos taurus GN... [more]
DNAJ1_CERAE2.609e-2945.77DnaJ homolog subfamily A member 1 OS=Cercopithecus... [more]
DNJA2_HUMAN4.450e-2946.27DnaJ homolog subfamily A member 2 OS=Homo sapiens ... [more]
DNJA2_BOVIN7.591e-2946.27DnaJ homolog subfamily A member 2 OS=Bos taurus GN... [more]
DNJA2_MOUSE2.209e-2845.52DnaJ homolog subfamily A member 2 OS=Mus musculus ... [more]
DNJA2_RAT8.393e-2844.78DnaJ homolog subfamily A member 2 OS=Rattus norveg... [more]
DNJA4_MOUSE2.985e-2543.36DnaJ homolog subfamily A member 4 OS=Mus musculus ... [more]
DNJA4_HUMAN8.685e-2545.67DnaJ homolog subfamily A member 4 OS=Homo sapiens ... [more]
MAS5_SCHPO1.254e-2348.70Mitochondrial protein import protein mas5 OS=Schiz... [more]
MAS5_YEAST1.939e-1637.21Mitochondrial protein import protein MAS5 OS=Sacch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001G11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185478 ID=CN185478; Name=CN185478; organism=Citrus sinensis; type=EST; length=743bp
CCTTTTTTTTAATATTGTAAACACTAAAAATATTAATTATGAGCATTGAG
TCTGCACGTTGTTAACGCTAGAATTCCATTACATAGTCAGTTATCAGAAA
CATATAAGAATAAAGACAGACAAACCAAAACTAGAACCTCTAAAGCCTAT
AACAGAAAATAAATATGTTGAGAATCTTTTTCTCCCAAACAATGAAAATA
CTAAATCAGGCCACCCCTTTTCTTCTACATCATCACTGCTGAGCACACTG
CACTCTCTGGGCACCACCTTGCATATCGTCATCTTCATCGTATGCCTCCT
GAGCTGCTTGTTGCTTCCTTCGCATTTCCTCCTCAATGTTCACATCATGC
AGGGTTGTTTCTTCACACTCATCCAGTTCCATATCGGTGAGCTGGACTGA
GGTCCTTGGAGGTAGTACGGTCTCCAGCATCTTGCACTGGTCTGGGCTCA
GTGACTCAGGGAAGTCAACACTGAAATGAATGTACAGTTTGCCCCTCATA
AATGGCCTCTGATACATAGGCATTCCTTCATCATTTATGGCCTTGAATTG
GTCCGGCTTGACTACTTCCCCAGGCTGGGATTTGATGAGGAGTTGCCGGC
CATCCAAATGAGTTATTACAAATTGAAAGCCACAGAGAGCTTCTGTCAGT
GACAGGGTGTGCTCAACAAATAGGTCATCACCCTTTCGCTTAAATTTCGG
GTGCTCTTTCTGTTGTAGAACAAATACAATGTCACCTGTGACA
back to top