CN185478

Overview
NameCN185478
Unique NameCN185478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig760 contig Csv1_Contig760:869..1610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJB1_BOVIN (DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  410 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 742
            +  DIVFVL+ K H  FKR G D+     +SL EALCG    +  LDGR + +  +  +V++P   + +  EG+P+ + P  RG L I F V FPE +      +LE VLP
Sbjct:  231 IPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 339          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEEL (DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=dnj-20 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 44/113 (38.94%), Postives = 67/113 (59.29%), Query Frame = -2
Query:  401 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES-LSPDQCKMLETVLPPRT 736
            GD+ F ++ ++HP+F+RKGDDL+   T+SL +AL GF+  I HLDG   ++K Q  +V  P       DEGMP  +    +G L + F V+FP++ LS +Q   +  +L   T
Sbjct:  236 GDLKFKIRIQKHPRFERKGDDLYTNVTISLQDALNGFEMEIQHLDGH--IVKVQRDKVTWPGARLRKKDEGMPSLEDNNKKGMLVVTFDVEFPKTELSDEQKAQIIEILQQNT 346          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: SIS1_YEAST (Protein SIS1 OS=Saccharomyces cerevisiae GN=SIS1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = -2
Query:  422 FVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQL-LIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLE 724
            FV+Q+K HP FKR GDDL     LS  E+L GF   I  +DGR L L + QP   V+P Q      +GMP  + P  RG L + + VD+P SL+  Q + ++
Sbjct:  251 FVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID 349          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DJB13_MOUSE (DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 39/110 (35.45%), Postives = 64/110 (58.18%), Query Frame = -2
Query:  413 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVL 742
            +  DI+F++++K HP+F+R+ D+LF  + + L +AL      +  LD R L I     ++V P  FK +  EGMP+ + P  +G L+I F + FP  L+P + +ML   L
Sbjct:  207 IPADIIFIVKEKLHPRFRREHDNLFFVYPIPLGKALTCCTVEVKTLDDRLLNIPIN--DIVHPKYFKIVPGEGMPLPENPSKKGDLFIFFDIQFPTRLTPQKKQMLRQAL 314          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNAJ1_DROME (DnaJ protein homolog 1 OS=Drosophila melanogaster GN=DnaJ-1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = -2
Query:  410 DIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 733
            DIVF+++ K H  FKR+G DL     +SL +ALCG    +  L G ++ +     E++KP   + IN  G+P+ + P  RG L + F + FP++L+P     L  +LP
Sbjct:  227 DIVFIIRDKPHSLFKREGIDLKYTAQISLKQALCGALVSVPTLQGSRIQVNPNH-EIIKPTTTRRINGLGLPVPKEPSRRGDLIVSFDIKFPDTLAPSLQNQLSELLP 333          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DJB13_HUMAN (DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 38/110 (34.55%), Postives = 64/110 (58.18%), Query Frame = -2
Query:  413 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVL 742
            +  DI+F++++K HP+F+R+ D+LF  + + L +AL      +  LD R L I     +++ P  FK +  EGMP+ + P  +G L+I F + FP  L+P + +ML   L
Sbjct:  207 IPADIIFIVKEKLHPRFRRENDNLFFVNPIPLGKALTCCTVEVRTLDDRLLNIPIN--DIIHPKYFKKVPGEGMPLPEDPTKKGDLFIFFDIQFPTRLTPQKKQMLRQAL 314          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: XDJ1_SCHPO (DnaJ protein homolog xdj1 OS=Schizosaccharomyces pombe GN=xdj1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = -2
Query:  383 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGF-QFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSVQLTD 736
            GD++  L QK HP F+R GDDL  +  +SL EAL GF + ++T LDGR L      G+++ P     I  EGM    +  +RG LY+   ++FP+   +   + ++L  +LP    V + D
Sbjct:  251 GDVILQLHQKPHPVFERLGDDLKAKLKISLAEALTGFNRVILTTLDGRGLEYVQPIGKILHPGDCLIIPGEGMYKDSKTDLRGDLYLEVDIEFPKDGLIGTTEIEILRDILPSIPKVSVMD 371          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DJB11_PONAB (DnaJ homolog subfamily B member 11 OS=Pongo abelii GN=DNAJB11 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  431 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 736
            GD+ F ++  +HP F+R+GDDL+   T+SL E+L GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ +
Sbjct:  237 GDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAR 336          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DJB11_HUMAN (DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  431 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 736
            GD+ F ++  +HP F+R+GDDL+   T+SL E+L GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ +
Sbjct:  237 GDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAR 336          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: PSI1_SCHPO (Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.699e-12
Identity = 44/103 (42.72%), Postives = 57/103 (55.34%), Query Frame = -2
Query:  437 DIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKS----QPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQ 733
            DI FVL +K HP F R GDDL ++  LSL EAL GF   I+ +DG++L + S    QPG  +    F      GMP+ + P  RG + I   V FP  L+P Q
Sbjct:  276 DIQFVLAEKPHPVFTRSGDDLRMQVELSLKEALLGFSKQISTIDGKKLKVSSSLPTQPGYEITYPGF------GMPLPKNPSQRGNMIIECKVKFPTELTPAQ 372          
The following BLAST results are available for this feature:
BLAST of CN185478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
DNJB1_BOVIN2.371e-1439.64DnaJ homolog subfamily B member 1 OS=Bos taurus GN... [more]
DNJ20_CAEEL2.371e-1438.94DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=d... [more]
SIS1_YEAST1.177e-1342.16Protein SIS1 OS=Saccharomyces cerevisiae GN=SIS1 P... [more]
DJB13_MOUSE1.177e-1335.45DnaJ homolog subfamily B member 13 OS=Mus musculus... [more]
DNAJ1_DROME1.537e-1336.11DnaJ protein homolog 1 OS=Drosophila melanogaster ... [more]
DJB13_HUMAN2.007e-1334.55DnaJ homolog subfamily B member 13 OS=Homo sapiens... [more]
XDJ1_SCHPO2.621e-1335.54DnaJ protein homolog xdj1 OS=Schizosaccharomyces p... [more]
DJB11_PONAB1.301e-1236.27DnaJ homolog subfamily B member 11 OS=Pongo abelii... [more]
DJB11_HUMAN1.301e-1236.27DnaJ homolog subfamily B member 11 OS=Homo sapiens... [more]
PSI1_SCHPO1.699e-1242.72Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185478 ID=CN185478; Name=CN185478; organism=Citrus sinensis; type=EST; length=743bp
CCTTTTTTTTAATATTGTAAACACTAAAAATATTAATTATGAGCATTGAG
TCTGCACGTTGTTAACGCTAGAATTCCATTACATAGTCAGTTATCAGAAA
CATATAAGAATAAAGACAGACAAACCAAAACTAGAACCTCTAAAGCCTAT
AACAGAAAATAAATATGTTGAGAATCTTTTTCTCCCAAACAATGAAAATA
CTAAATCAGGCCACCCCTTTTCTTCTACATCATCACTGCTGAGCACACTG
CACTCTCTGGGCACCACCTTGCATATCGTCATCTTCATCGTATGCCTCCT
GAGCTGCTTGTTGCTTCCTTCGCATTTCCTCCTCAATGTTCACATCATGC
AGGGTTGTTTCTTCACACTCATCCAGTTCCATATCGGTGAGCTGGACTGA
GGTCCTTGGAGGTAGTACGGTCTCCAGCATCTTGCACTGGTCTGGGCTCA
GTGACTCAGGGAAGTCAACACTGAAATGAATGTACAGTTTGCCCCTCATA
AATGGCCTCTGATACATAGGCATTCCTTCATCATTTATGGCCTTGAATTG
GTCCGGCTTGACTACTTCCCCAGGCTGGGATTTGATGAGGAGTTGCCGGC
CATCCAAATGAGTTATTACAAATTGAAAGCCACAGAGAGCTTCTGTCAGT
GACAGGGTGTGCTCAACAAATAGGTCATCACCCTTTCGCTTAAATTTCGG
GTGCTCTTTCTGTTGTAGAACAAATACAATGTCACCTGTGACA
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