CN185478

Overview
NameCN185478
Unique NameCN185478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig760 contig Csv1_Contig760:869..1610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DJB11_CANFA (DnaJ homolog subfamily B member 11 OS=Canis familiaris GN=DNAJB11 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 37/102 (36.27%), Postives = 59/102 (57.84%), Query Frame = -2
Query:  431 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 736
            GD+ F ++  +HP F+R+GDDL+   T+SL E+L GF   ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ +
Sbjct:  237 GDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFDMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAR 336          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DJB11_RAT (DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = -2
Query:  431 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 736
            GD+ F ++  +H  F+R+GDDL+   T+SL EAL GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ K
Sbjct:  237 GDLRFRIKVVKHRIFERRGDDLYTNVTVSLVEALVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAK 336          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DJB11_MOUSE (DnaJ homolog subfamily B member 11 OS=Mus musculus GN=Dnajb11 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = -2
Query:  431 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 736
            GD+ F ++  +H  F+R+GDDL+   T+SL EAL GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ K
Sbjct:  237 GDLRFRIKVVKHRIFERRGDDLYTNVTVSLVEALVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAK 336          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DJB11_BOVIN (DnaJ homolog subfamily B member 11 OS=Bos taurus GN=DNAJB11 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 40/109 (36.70%), Postives = 63/109 (57.80%), Query Frame = -2
Query:  413 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFP-ESLSPDQCKMLETVL 736
            GD+ F ++  +H  F+R+GDDL+   T+SL E+L GF   ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP E LS +  + ++ +L
Sbjct:  237 GDLRFRIKVVKHSIFERRGDDLYTNVTISLVESLVGFDMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLSEEAREGIKQLL 343          
The following BLAST results are available for this feature:
BLAST of CN185478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
DJB11_CANFA2.219e-1236.27DnaJ homolog subfamily B member 11 OS=Canis famili... [more]
DJB11_RAT3.785e-1237.25DnaJ homolog subfamily B member 11 OS=Rattus norve... [more]
DJB11_MOUSE3.785e-1237.25DnaJ homolog subfamily B member 11 OS=Mus musculus... [more]
DJB11_BOVIN1.438e-1136.70DnaJ homolog subfamily B member 11 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185478 ID=CN185478; Name=CN185478; organism=Citrus sinensis; type=EST; length=743bp
CCTTTTTTTTAATATTGTAAACACTAAAAATATTAATTATGAGCATTGAG
TCTGCACGTTGTTAACGCTAGAATTCCATTACATAGTCAGTTATCAGAAA
CATATAAGAATAAAGACAGACAAACCAAAACTAGAACCTCTAAAGCCTAT
AACAGAAAATAAATATGTTGAGAATCTTTTTCTCCCAAACAATGAAAATA
CTAAATCAGGCCACCCCTTTTCTTCTACATCATCACTGCTGAGCACACTG
CACTCTCTGGGCACCACCTTGCATATCGTCATCTTCATCGTATGCCTCCT
GAGCTGCTTGTTGCTTCCTTCGCATTTCCTCCTCAATGTTCACATCATGC
AGGGTTGTTTCTTCACACTCATCCAGTTCCATATCGGTGAGCTGGACTGA
GGTCCTTGGAGGTAGTACGGTCTCCAGCATCTTGCACTGGTCTGGGCTCA
GTGACTCAGGGAAGTCAACACTGAAATGAATGTACAGTTTGCCCCTCATA
AATGGCCTCTGATACATAGGCATTCCTTCATCATTTATGGCCTTGAATTG
GTCCGGCTTGACTACTTCCCCAGGCTGGGATTTGATGAGGAGTTGCCGGC
CATCCAAATGAGTTATTACAAATTGAAAGCCACAGAGAGCTTCTGTCAGT
GACAGGGTGTGCTCAACAAATAGGTCATCACCCTTTCGCTTAAATTTCGG
GTGCTCTTTCTGTTGTAGAACAAATACAATGTCACCTGTGACA
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