CN185477

Overview
NameCN185477
Unique NameCN185477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:122..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.169e-18
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  143 SNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 412
            SN   +L+VVDF+A+WCGPC+ I PF   + +K P+V+F+++DVD+ + VA+   V+ MPTF F K  + V +  GA KE+L++ I K++
Sbjct:   16 SNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKYM 105          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  155 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 400
            ++LVVVDF+A+WCGPC+ I PF   L  K  +V+F+++DVD+ + VAT   V+ MPTF F K GK V +  GA KE+L++TI
Sbjct:   20 EKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 5.802e-18
Identity = 46/95 (48.42%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  119 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTF-MFLKEGKIVDKVVGAKKEELQQTI 400
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF  F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.205e-17
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  158 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK-IVDKVVGAKKEELQQTIAKH 409
            +LVV+DFTASWCGPC+ IAP   E+AK+ P+V+F KVDVDE    A    ++AMPTF F K GK + D V GA +  L++ I K+
Sbjct:   21 KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.879e-17
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 2
Query:   92 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 400
            +V+   + E+WN  + ++      +V  FTA WC P  F+  F  ELA    + LFL VDVDE+K VA+   V+AMPTF+FLK+G  +DK+VGA  +E+++ +
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.879e-17
Identity = 42/101 (41.58%), Postives = 64/101 (63.37%), Query Frame = 2
Query:  125 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 427
            NE L+KS ++ +L++VDF A+WCGPCR I+P    L+ +  N  FLKV+ D  + +   +++ AMPTF+F K  + VD V GA +  +  TI KH ++  A
Sbjct:   13 NEILEKS-DSNRLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKHYSSTPA 112          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 2
Query:  158 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIA 403
            +LVVVDF A+WCGPC+ IAP + + +++ P   F K+DVDEL  VA    V AMPT +  K GK V KVVGA    ++Q IA
Sbjct:   19 KLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 100          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  128 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 415
            EQL + +  K ++++DF A+WCGPC+ IAP   ELA     ++F KVDVDE + + + + V+ MPTF+F K G  ++ + G  ++EL+Q + +H++
Sbjct:   19 EQLIRQHPEK-IIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVS 113          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 44/107 (41.12%), Postives = 67/107 (62.62%), Query Frame = 2
Query:   95 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 409
            V+    + A++  L+ + +  +LVVVDFTA+WCGPC+ I P    L+K     NV+FLKVDVD+   V++   ++ MPTF F K G+ +D+  GA ++ L+Q I  H
Sbjct:    2 VVHIENLNAFSAALKNAGD--KLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 46/117 (39.32%), Postives = 71/117 (60.68%), Query Frame = 2
Query:   56 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 406
            P +  M   E  +V    + E +   L+++ E  +LV VDF+A+WCGPCR I PF   L+ K  +V+FL+VD D  + V  + A+  +PTF F K+ + VD++ GA KE+L+  IA+
Sbjct:  437 PEEETMEFPEGDKVKVILSKEDFEASLKEAGE--RLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAE 551          
The following BLAST results are available for this feature:
BLAST of CN185477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
THIO_OPHHA1.169e-1844.44Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_CHICK1.527e-1851.22Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_PONAB5.802e-1848.42Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_GEOCY2.205e-1752.94Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
TRXL4_ARATH2.879e-1741.75Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
NGLY1_CAEBR2.879e-1741.58Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRX1_YEAST2.438e-1651.22Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO1_CAEEL2.438e-1639.58Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
THIO_ICTPU3.184e-1641.12Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
TXND2_HUMAN4.158e-1639.32Thioredoxin domain-containing protein 2 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185477 ID=CN185477; Name=CN185477; organism=Citrus sinensis; type=EST; length=727bp
AGGAAAGCGAGGGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGT
AATAACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATC
GGGTGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGA
AACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCAT
GCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAAT
GTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGA
CTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGA
TTGTGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATT
GCCAAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCT
GCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTA
ATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAAT
ATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTCTTTACAATAA
TTTAATTTCATATTTGTTGTTGAACCTAATTTTGATATTGAGAGTGACTC
ATATTTTGTTGAGTGTGTTCCTGGGATATGATAAGACATGCGTGACAGCT
TCTTGTCCCATAAAAAAAAAAAAAAAA
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