CN185477

Overview
NameCN185477
Unique NameCN185477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:122..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  167 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 412
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  167 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 412
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  167 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 412
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  167 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 412
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  167 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 412
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  167 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 412
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  167 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 412
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  167 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 412
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  167 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 412
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  167 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 412
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104
The following BLAST results are available for this feature:
BLAST of CN185477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
THIO_STAAS2.523e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR2.523e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN2.523e-1348.81Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM2.523e-1348.81Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC2.523e-1348.81Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB2.523e-1348.81Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA82.523e-1348.81Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA32.523e-1348.81Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_STAES3.295e-1348.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ3.295e-1348.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185477 ID=CN185477; Name=CN185477; organism=Citrus sinensis; type=EST; length=727bp
AGGAAAGCGAGGGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGT
AATAACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATC
GGGTGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGA
AACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCAT
GCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAAT
GTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGA
CTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGA
TTGTGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATT
GCCAAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCT
GCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTA
ATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAAT
ATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTCTTTACAATAA
TTTAATTTCATATTTGTTGTTGAACCTAATTTTGATATTGAGAGTGACTC
ATATTTTGTTGAGTGTGTTCCTGGGATATGATAAGACATGCGTGACAGCT
TCTTGTCCCATAAAAAAAAAAAAAAAA
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