CN185477

Overview
NameCN185477
Unique NameCN185477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:122..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 2
Query:  158 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 400
            ++VV+D    WCGPC+ IAP   EL++K  +++FLK+D + + K +A +  +  +PTF  LK+ K+V +V GAK E+L   I
Sbjct:   98 KIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAI 179          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 44/123 (35.77%), Postives = 71/123 (57.72%), Query Frame = 2
Query:   56 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSN--ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 412
            PR++ +  AE G V         N+   K+   E+   V+VDF A WCGPCR IAP + E+A +  + L  +K++ DE  +VA+++ + ++PT M  K GK  + ++GA  K  + QT+ K+L
Sbjct:   26 PRRSVVVRAEAGAV---------NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  149 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 415
            E++  V+VDF A WCGPC+ IAP + ELAK+    +   K++ DE   +AT + + ++PT +F K G+  + ++GA  K  L  +I K+L+
Sbjct:   90 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 180          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  161 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 412
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  161 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 412
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  152 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 412
            ++Q V+VDF A WCGPCR IA  + E+A    + L  +KV+ D+  ++AT++ + ++PT M    GK VD VVGA  K  L  T+ KHL
Sbjct:   18 SRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHL 106          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  155 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 424
            ++LVV+D    WCGPC+ IAP    L++K  +V+FLK+D + + + +A +  +  +PTF  LK+ K+V +V GAK ++L   I    + AS
Sbjct:   87 EKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSAAS 177          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: TR548_MIMIV (Thioredoxin-like protein R548 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R548 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  146 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV--DELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 406
            +E+K LV++DF  +WCGPC+ IAP    +A+K P V F K++   + L ++     + ++PTF F K GK + + V A    L+++I +
Sbjct:   46 DESKGLVIIDFFTTWCGPCKRIAPDYIRMAEKYPTVSFYKINAENENLANIVAACEIVSLPTFCFFKAGKYIGRFVNADPVGLEKSIVE 134          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: GLRX3_XENTR (Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 32/93 (34.41%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  146 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 424
            N  K L VV F A W   C  +   +AELAK+ P V+F+K++ + +  V+  + V ++PTF+F K  + +D++ GA   EL + + +H ++ S
Sbjct:   19 NSAKSLTVVHFWAPWAPQCTQMNEVMAELAKEQPQVMFVKLEAEAVPEVSEKYEVTSVPTFLFFKNSQKIDRLDGAHAPELTKRVQRHASSTS 111          
BLAST of CN185477 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 31/86 (36.05%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  164 VVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 415
            V+VDF A WCGPCR ++P + E+A++   ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+GA  K  L  T+ K+++
Sbjct:   22 VLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAVPKSTLASTLNKYIS 107          
The following BLAST results are available for this feature:
BLAST of CN185477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
TRXF2_ARATH2.789e-1241.46Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM_CHLRE3.643e-1235.77Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
TRXM_SPIOL4.757e-1238.46Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_LISMO4.757e-1239.53Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN4.757e-1239.53Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO_GRIPA4.757e-1243.82Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
TRXF1_ARATH6.213e-1238.46Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
TR548_MIMIV1.384e-1135.96Thioredoxin-like protein R548 OS=Acanthamoeba poly... [more]
GLRX3_XENTR1.384e-1134.41Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2... [more]
THIO_PORYE1.808e-1136.05Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185477 ID=CN185477; Name=CN185477; organism=Citrus sinensis; type=EST; length=727bp
AGGAAAGCGAGGGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGT
AATAACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATC
GGGTGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGA
AACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCAT
GCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAAT
GTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGA
CTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGA
TTGTGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATT
GCCAAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCT
GCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTA
ATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAAT
ATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTCTTTACAATAA
TTTAATTTCATATTTGTTGTTGAACCTAATTTTGATATTGAGAGTGACTC
ATATTTTGTTGAGTGTGTTCCTGGGATATGATAAGACATGCGTGACAGCT
TCTTGTCCCATAAAAAAAAAAAAAAAA
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