CN185473

Overview
NameCN185473
Unique NameCN185473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 64/134 (47.76%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   37 GDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 426
            G I  E+  D VP+TAENF ALC    G+ Y    FHR I  FM Q             SI+G+KF+DE    L+H   G+LSMANSGPNTNGSQFFI   K   L+G + VFGRV+ G  V+  ME   + SG
Sbjct:  126 GRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSG 258          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 64/134 (47.76%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   37 GDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 426
            G I  E+  D VP+TAENF ALC    G+ Y    FHR I  FM Q             SI+G+KF+DE    L+H   G+LSMANSGPNTNGSQFFI   K   L+G + VFGRV+ G  V+  ME   + SG
Sbjct:   32 GRIVMELRSDIVPRTAENFRALCTGDRGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSG 164          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 65/145 (44.83%), Postives = 84/145 (57.93%), Query Frame = 1
Query:   31 NLGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 453
            ++G I   +  + VPKT ENF+AL     GY Y G+IFHR IK FMIQ             SI+G+ F DE    LKH   G +SMAN+GP+TNGSQFFI+  K   L+G + VFG+V+ G  V+  +E   T   DRPL +  I
Sbjct:   50 DVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTI 193          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.907e-21
Identity = 63/135 (46.67%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   34 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 426
            LG +  E+  D VPKTAENF ALC    G+ Y G+ FHR I  FM Q             SI+G +F DE   +LKH   G+LSMAN+GPNTNGSQFFI   K   L+G + VFG V  G +V+  +E   + SG
Sbjct:   58 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSG 191          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.907e-21
Identity = 63/135 (46.67%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   34 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 426
            LG +  E+  D VPKTAENF ALC    G+ Y G+ FHR I  FM Q             SI+G +F DE   +LKH   G+LSMAN+GPNTNGSQFFI   K   L+G + VFG V  G +V+  +E   + SG
Sbjct:   58 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGRSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSG 191          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.907e-21
Identity = 63/135 (46.67%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   34 LGDIKCEIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 426
            LG +  E+  D VPKTAENF ALC    G+ Y G+ FHR I  FM Q             SI+G +F DE   +LKH   G+LSMAN+GPNTNGSQFFI   K   L+G + VFG V  G +V+  +E   + SG
Sbjct:   59 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSG 192          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPID_CRYNE (Peptidyl-prolyl cis-trans isomerase D OS=Cryptococcus neoformans GN=CPR6 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.907e-21
Identity = 66/150 (44.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query:   37 GDIKCEIACDEVPKTAENFLALCASGY---------YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRIN 456
            G +  E+  D VPKTA NF  LC             Y G+ FHR IKGFM+Q             SI+G+KF DE  E LKH+   +LSMAN+GP TNGSQFFI+    PHL+G + VFGRVI+   ++  +E   T S DRP   + I+
Sbjct:   18 GRLTFELFDDVVPKTANNFKHLCIGDKTNEAGVKLAYAGSSFHRCIKGFMLQGGDFTRGDGTGGESIYGEKFEDENFE-LKHDKPMLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGRVIYNRSLVRRIENIPTTS-DRPDQAVTIS 165          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.907e-21
Identity = 62/130 (47.69%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   70 VPKTAENFLALCA-------SG---YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 426
            VPKT ENF ALC        SG   +Y  + FHR I  FMIQ             SI+GKKFNDE    +KH+  G+LSMAN+GPNTNGSQFFI+      L+G +TVFG VI G +++ L+E   + SG
Sbjct:   55 VPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDE-NFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSG 183          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.102e-21
Identity = 64/151 (42.38%), Postives = 87/151 (57.62%), Query Frame = 1
Query:    4 GKMSVTLHTNLGDIKCEIACDEVPKTAENFLALCASGY--------YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGD 429
            GK+  T++  L D       + VPKT +NF +LC +G+        Y G+ FHR IK FM+Q             SI+G+KF DE  E LKH+   +LSMAN+GPNTNGSQFFI+    PHL+G + VFG+VI G   +  +E  +T + D
Sbjct:   13 GKIQPTIYFELFD-------NVVPKTVKNFASLC-NGFEKDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFE-LKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDD 154          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.102e-21
Identity = 64/145 (44.14%), Postives = 81/145 (55.86%), Query Frame = 1
Query:   31 NLGDIKCEIACDEVPKTAENFLALCASGY---YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 453
            +LG I   +  D VPKT ENF ALC       Y G+ FHR IK FMIQ             SI+G+KF DE    LKH     LSMAN+G +TNGSQFFI+      L+G + VFG V+ G +++D +E A TG+   P  +I I
Sbjct:   44 SLGKIVMGLYGDVVPKTVENFRALCTGETGKGYKGSKFHRVIKNFMIQGGDFTRGDGTGGESIYGRKFPDE-NFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGQDIVDAIENAPTGARSNPKVDITI 187          
The following BLAST results are available for this feature:
BLAST of CN185473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
PPIE_SCHMA2.991e-2147.76Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PPIE_SCHJA2.991e-2147.76Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
PPIC_MOUSE2.991e-2144.83Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIF_RAT3.907e-2146.67Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE3.907e-2146.67Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_HUMAN3.907e-2146.67Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPID_CRYNE3.907e-2144.00Peptidyl-prolyl cis-trans isomerase D OS=Cryptococ... [more]
PPIB_DICDI3.907e-2147.69Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPID_SCHPO5.102e-2142.3840 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]
PPIB_YARLI5.102e-2144.14Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001G07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185473 ID=CN185473; Name=CN185473; organism=Citrus sinensis; type=EST; length=688bp
AGGGGTAAGATGTCGGTAACTCTACACACTAATCTGGGTGATATTAAGTG
CGAGATTGCTTGCGACGAAGTCCCTAAGACGGCTGAGAATTTTTTGGCAC
TATGCGCGAGTGGTTACTACGATGGGACCATTTTTCACCGGAATATTAAA
GGTTTTATGATTCAAGGTGGAGACCCAACAGGCACTGGAAAAGGCGGAAC
AAGCATATGGGGCAAGAAGTTCAATGATGAGATAAGGGAGTCCCTCAAGC
ATAATGCTAGAGGGATACTGTCAATGGCCAATAGTGGCCCTAACACTAAT
GGAAGCCAATTCTTCATCTCTTATGCAAAGCAGCCCCATCTTAACGGATT
GTACACTGTGTTTGGTAGAGTAATTCATGGGTTCGAAGTTCTTGACCTTA
TGGAAAAGGCTCAAACTGGATCAGGGGACCGGCCACTTGCGGAGATAAGG
ATCAATCGAGTTACCATACATGCTAACCCACTTGCTGTCTAGCTTTGTCT
GAAAATTTCTTGTTGTATAACATTGTAAAGAGGCTTAGTGTGGAGTGGGA
ACAGTGACTTACGATTAAACTCCCAGTAGACTCTGTACATTTTTCTTTTC
CCAGTTATGACTATGGGCTTGAAGGAAGAAGTAACCGCAGAATTTTATGT
AGCATCAAATGGTGAGATTGACGATTGAGAAAAAAAAA
back to top