CN185388

Overview
NameCN185388
Unique NameCN185388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185388_ssr25 microsatellite CN185388_ssr25:25..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2479 contig Csv1_Contig2479:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185388 vs. ExPASy Swiss-Prot
Match: NTF2_CLAHE (Nuclear transport factor 2 OS=Cladosporium herbarum GN=NTF2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.069e-27
Identity = 60/121 (49.59%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  136 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNY 498
            D +++A+ F E YY TFD +R  LA LY+E SMLTFE     G+ NIV KL  LPFQ+ +H + TVD QPS  +GG+LV VSG L +  E+  + ++Q F L+P   G++YV ND+FRL Y
Sbjct:    3 DFNAIAQQFTEFYYKTFDTDRAQLAPLYRENSMLTFEQSPFLGTANIVGKLQELPFQRIEHQVATVDAQPSNESGGILVVVSGALLVEEERRPMSYTQTFQLLPA-DGAYYVFNDVFRLVY 122          
BLAST of CN185388 vs. ExPASy Swiss-Prot
Match: NTF2_YARLI (Nuclear transport factor 2 OS=Yarrowia lipolytica GN=NTF2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.426e-24
Identity = 60/122 (49.18%), Postives = 85/122 (69.67%), Query Frame = 1
Query:  133 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGG-MLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLN 495
            +D +++AK F E YY TFD +R+ L NLY++ SMLTF G + QG+Q IV KL  LPF Q +H I+ +D QP+   GG ++V V+G L + G+ + L ++Q+FHL+P    S+YV NDIFRLN
Sbjct:    3 VDFNTLAKQFCEFYYQTFDTDRSQLGNLYRDHSMLTFTGTQHQGAQAIVEKLVGLPFGQVRHKISDIDAQPASAQGGDVIVLVTGELCVDGD-NPLPYAQVFHLIP-DGSSYYVFNDIFRLN 122          
BLAST of CN185388 vs. ExPASy Swiss-Prot
Match: NTF2_NEUCR (Nuclear transport factor 2 OS=Neurospora crassa GN=ntf-2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  133 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 492
            +D  ++A  FV HYY+TFD++R  LA LY++ SMLTFEG +  G+Q I  KLTSLPFQ+ +H     D QP+   GG+++ V+G L +  EQ  L +SQ F L     G ++V NDIF+L
Sbjct:    3 LDFTAIATQFVAHYYSTFDSDRKNLAGLYRDNSMLTFEGAQSLGAQGITEKLTSLPFQKVKHEYGPPDAQPTA-TGGIIILVTGQLIVDDEQRPLGYSQAFQLSQDASGQWFVFNDIFKL 121          
BLAST of CN185388 vs. ExPASy Swiss-Prot
Match: NTF2_DICDI (Nuclear transport factor 2 OS=Dictyostelium discoideum GN=nutf2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 54/123 (43.90%), Postives = 79/123 (64.23%), Query Frame = 1
Query:  133 MDPD--SVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGE-QHALKFSQMFHLMPTPQGSFYVLNDIFRL 492
            +DP    V K FVEHYY  FD+NR GL  +YQ+ + LT+EG+ + G+  IV  +  LPFQQ    I ++DCQ +    G+++ V+G L + GE ++ LKF Q+F+L  +  GSF ++ND FRL
Sbjct:    4 VDPQVVGVGKQFVEHYYGIFDSNRAGLTQIYQQQTTLTWEGKFLSGADAIVKHIVELPFQQTNRKINSIDCQQTYQP-GIMITVTGTLIIDGEAKNQLKFVQVFNL-ASNNGSFLLINDFFRL 124          
BLAST of CN185388 vs. ExPASy Swiss-Prot
Match: NTF2_CAEEL (Probable nuclear transport factor 2 OS=Caenorhabditis elegans GN=ran-4 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = 1
Query:  118 LKFNQMDPDSVAKAFVEHYYTTFD-----ANRTGLANLYQ-EGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLN 495
            + FN  D +SVAKAF++HYY+ FD     +   GL++LY  E S +TFEGQ+ +G   I+ K T+L F + Q +IT +D QP    G + V V G L+   E     FSQ+F L P  QGS+++ N+IFRL+
Sbjct:    1 MSFNP-DYESVAKAFIQHYYSKFDVGDGMSRAQGLSDLYDPENSYMTFEGQQAKGRDGILQKFTTLGFTKIQRAITVIDSQPLYD-GSIQVMVLGQLK-TDEDPINPFSQVFILRPNNQGSYFIGNEIFRLD 129          
BLAST of CN185388 vs. ExPASy Swiss-Prot
Match: NTF2_RAT (Nuclear transport factor 2 OS=Rattus norvegicus GN=Nutf2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  142 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 492
            + +  +F++HYY  FD +RT L  +Y + S LT+EGQ+ QG   IV KL+SLPFQ+ QHSIT  D QP+ P   ++  V G L+ A E   + F QMF L+     ++   ND+FRL
Sbjct:    8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPT-PDSCIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRL 121          
BLAST of CN185388 vs. ExPASy Swiss-Prot
Match: NTF2_PONAB (Nuclear transport factor 2 OS=Pongo abelii GN=NUTF2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  142 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 492
            + +  +F++HYY  FD +RT L  +Y + S LT+EGQ+ QG   IV KL+SLPFQ+ QHSIT  D QP+ P   ++  V G L+ A E   + F QMF L+     ++   ND+FRL
Sbjct:    8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPT-PDSCIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRL 121          
BLAST of CN185388 vs. ExPASy Swiss-Prot
Match: NTF2_MOUSE (Nuclear transport factor 2 OS=Mus musculus GN=Nutf2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  142 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 492
            + +  +F++HYY  FD +RT L  +Y + S LT+EGQ+ QG   IV KL+SLPFQ+ QHSIT  D QP+ P   ++  V G L+ A E   + F QMF L+     ++   ND+FRL
Sbjct:    8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPT-PDSCIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRL 121          
BLAST of CN185388 vs. ExPASy Swiss-Prot
Match: NTF2_HUMAN (Nuclear transport factor 2 OS=Homo sapiens GN=NUTF2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  142 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 492
            + +  +F++HYY  FD +RT L  +Y + S LT+EGQ+ QG   IV KL+SLPFQ+ QHSIT  D QP+ P   ++  V G L+ A E   + F QMF L+     ++   ND+FRL
Sbjct:    8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPT-PDSCIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRL 121          
BLAST of CN185388 vs. ExPASy Swiss-Prot
Match: NTF2_BOVIN (Nuclear transport factor 2 OS=Bos taurus GN=NUTF2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  142 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 492
            + +  +F++HYY  FD +RT L  +Y + S LT+EGQ+ QG   IV KL+SLPFQ+ QHSIT  D QP+ P   ++  V G L+ A E   + F QMF L+     ++   ND+FRL
Sbjct:    8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPT-PDSCIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRL 121          
The following BLAST results are available for this feature:
BLAST of CN185388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NTF2_CLAHE3.069e-2749.59Nuclear transport factor 2 OS=Cladosporium herbaru... [more]
NTF2_YARLI1.426e-2449.18Nuclear transport factor 2 OS=Yarrowia lipolytica ... [more]
NTF2_NEUCR2.432e-2446.67Nuclear transport factor 2 OS=Neurospora crassa GN... [more]
NTF2_DICDI2.783e-2043.90Nuclear transport factor 2 OS=Dictyostelium discoi... [more]
NTF2_CAEEL1.527e-1843.18Probable nuclear transport factor 2 OS=Caenorhabdi... [more]
NTF2_RAT1.688e-1743.59Nuclear transport factor 2 OS=Rattus norvegicus GN... [more]
NTF2_PONAB1.688e-1743.59Nuclear transport factor 2 OS=Pongo abelii GN=NUTF... [more]
NTF2_MOUSE1.688e-1743.59Nuclear transport factor 2 OS=Mus musculus GN=Nutf... [more]
NTF2_HUMAN1.688e-1743.59Nuclear transport factor 2 OS=Homo sapiens GN=NUTF... [more]
NTF2_BOVIN1.688e-1743.59Nuclear transport factor 2 OS=Bos taurus GN=NUTF2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001E05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185388 ID=CN185388; Name=CN185388; organism=Citrus sinensis; type=EST; length=728bp
AGGCCCAAACGAAATCTGAGAGCGCTCTCTCTCTCTCTCTCTCTCTCGTT
AGCGTGAGTCTCAAGCGGAAACAGCAAACGCAAAATTCGAAAAGAGAGGC
AGGGGTAGGAGGGGATTTTGAAATTCAATCAGATGGATCCAGACTCAGTG
GCTAAAGCCTTCGTCGAGCACTACTACACGACGTTTGATGCCAATCGTAC
GGGGCTCGCCAATCTCTATCAGGAAGGTTCAATGTTGACTTTTGAAGGTC
AAAAAATCCAAGGCTCGCAAAACATCGTCGCTAAGCTCACTAGCCTTCCC
TTCCAGCAGTGCCAGCACTCCATCACCACCGTCGATTGCCAGCCCTCCGG
TCCCGCTGGCGGCATGCTCGTTTTTGTCTCCGGTAATCTCCAACTCGCTG
GTGAACAGCACGCTCTCAAGTTCAGCCAGATGTTCCATTTGATGCCAACA
CCTCAGGGAAGCTTTTATGTGTTGAATGACATATTCAGGTTGAACTATGC
ATGAAGAGAAGATTGATTGAAAAGGGATGCAACTCCTGAAGGAGTGAAAC
ATGTTTCCTTATCTTTATTGGATTTTAAACATTTAAATGAACACTGGGTT
TTTCTGTGGTCGGTTATGTTTAAGGTTCCCTTGTGCCTTTCCTGAACTTT
AAATAGAGACATCTTTTCTGTGATTGGTTGAGTAACTGCAAGATCTCCCT
GAAGAAGTTGGGTCTTAGTGAAATGAAT
back to top