CN185388

Overview
NameCN185388
Unique NameCN185388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185388_ssr25 microsatellite CN185388_ssr25:25..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2479 contig Csv1_Contig2479:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185388 vs. ExPASy Swiss-Prot
Match: NTF2_XENLA (Nuclear transport factor 2 OS=Xenopus laevis GN=ntf2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.415e-17
Identity = 50/117 (42.74%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:  142 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 492
            + +  +F++ YY TFDA+RT LA +Y + S LT+EGQ+  G   IV KL+ LPFQ+ QHSIT+ D QP+ P   ++  V G L+ A +   + F Q+F L+   Q ++   ND+FRL
Sbjct:    8 EQIGASFIQQYYQTFDADRTQLAVIYTDASCLTWEGQQYHGKAAIVEKLSLLPFQKIQHSITSQDHQPT-PDSCIISMVVGQLK-ADDDPIMGFHQVF-LLKNIQDAWVCTNDMFRL 121
The following BLAST results are available for this feature:
BLAST of CN185388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NTF2_XENLA6.415e-1742.74Nuclear transport factor 2 OS=Xenopus laevis GN=nt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001E05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185388 ID=CN185388; Name=CN185388; organism=Citrus sinensis; type=EST; length=728bp
AGGCCCAAACGAAATCTGAGAGCGCTCTCTCTCTCTCTCTCTCTCTCGTT
AGCGTGAGTCTCAAGCGGAAACAGCAAACGCAAAATTCGAAAAGAGAGGC
AGGGGTAGGAGGGGATTTTGAAATTCAATCAGATGGATCCAGACTCAGTG
GCTAAAGCCTTCGTCGAGCACTACTACACGACGTTTGATGCCAATCGTAC
GGGGCTCGCCAATCTCTATCAGGAAGGTTCAATGTTGACTTTTGAAGGTC
AAAAAATCCAAGGCTCGCAAAACATCGTCGCTAAGCTCACTAGCCTTCCC
TTCCAGCAGTGCCAGCACTCCATCACCACCGTCGATTGCCAGCCCTCCGG
TCCCGCTGGCGGCATGCTCGTTTTTGTCTCCGGTAATCTCCAACTCGCTG
GTGAACAGCACGCTCTCAAGTTCAGCCAGATGTTCCATTTGATGCCAACA
CCTCAGGGAAGCTTTTATGTGTTGAATGACATATTCAGGTTGAACTATGC
ATGAAGAGAAGATTGATTGAAAAGGGATGCAACTCCTGAAGGAGTGAAAC
ATGTTTCCTTATCTTTATTGGATTTTAAACATTTAAATGAACACTGGGTT
TTTCTGTGGTCGGTTATGTTTAAGGTTCCCTTGTGCCTTTCCTGAACTTT
AAATAGAGACATCTTTTCTGTGATTGGTTGAGTAACTGCAAGATCTCCCT
GAAGAAGTTGGGTCTTAGTGAAATGAAT
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