CN185380

Overview
NameCN185380
Unique NameCN185380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185380 vs. ExPASy Swiss-Prot
Match: ACA6_ORYSJ (Probable calcium-transporting ATPase 6, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os05g0495600 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 35/80 (43.75%), Postives = 60/80 (75.00%), Query Frame = -2
Query:  159 QIFNEFNARKPDEKNLFKGITKNRLFMGIVAVTLVLQILIIQFLGKFASTTRLNWKHWIISVVIGFISGPLAILGKLIPV 398
            Q+FNE N R+ ++ N+ +GI +N +F+GI+  T++ Q++I++FLG FA+T  L+ + W++SVVIG IS  ++++ K IPV
Sbjct:  920 QVFNEINCREMEKINVLQGIFRNWIFVGILTATVIFQVIIVEFLGTFANTVPLSGELWLLSVVIGSISMIISVILKCIPV 999          
BLAST of CN185380 vs. ExPASy Swiss-Prot
Match: ACA2_ARATH (Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.465e-14
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = -2
Query:  159 QIFNEFNARKPDEKNLFKGITKNRLFMGIVAVTLVLQILIIQFLGKFASTTRLNWKHWIISVVIGFISGPLAILGKLIPV 398
            Q+FNE ++R+ +E ++FKGI  N +F+ ++  T+  QI+II+FLG FASTT L    WI S+ IGF+  P+A   K IPV
Sbjct:  935 QVFNEISSREMEEIDVFKGILDNYVFVVVIGATVFFQIIIIEFLGTFASTTPLTITQWIFSIFIGFLGMPIAAGLKTIPV 1014          
BLAST of CN185380 vs. ExPASy Swiss-Prot
Match: ACA1_ORYSJ (Calcium-transporting ATPase 1, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os12g0586600 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14
Identity = 34/80 (42.50%), Postives = 58/80 (72.50%), Query Frame = -2
Query:  159 QIFNEFNARKPDEKNLFKGITKNRLFMGIVAVTLVLQILIIQFLGKFASTTRLNWKHWIISVVIGFISGPLAILGKLIPV 398
            Q+FNE ++R+ ++ N+ +GI KN +F+G++  T+V Q +++QFLG+FA+T  L    WI SV++G I  P++ + KL+PV
Sbjct:  938 QVFNEISSREMEKINVLRGILKNYVFLGVLTSTVVFQFIMVQFLGEFANTIPLTRLQWIASVLLGLIGMPISAIIKLLPV 1017          
BLAST of CN185380 vs. ExPASy Swiss-Prot
Match: ACA2_ORYSJ (Calcium-transporting ATPase 2, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os03g0616400 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 32/80 (40.00%), Postives = 56/80 (70.00%), Query Frame = -2
Query:  159 QIFNEFNARKPDEKNLFKGITKNRLFMGIVAVTLVLQILIIQFLGKFASTTRLNWKHWIISVVIGFISGPLAILGKLIPV 398
            Q+FNE ++R+ ++ N+ +G+  N +F+G++  T+  Q +++QFLG FA+TT L  + W+IS++ GF+  P+A   KLI V
Sbjct:  942 QVFNEISSREMEDINVLRGMAGNSIFLGVLTGTIFFQFILVQFLGDFANTTPLTQQQWLISILFGFLGMPIAAAIKLIAV 1021          
BLAST of CN185380 vs. ExPASy Swiss-Prot
Match: ACA7_ARATH (Putative calcium-transporting ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=ACA7 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = -2
Query:  159 QIFNEFNARKPDEKNLFKGITKNRLFMGIVAVTLVLQILIIQFLGKFASTTRLNWKHWIISVVIGFISGPLAILGKLIPV 398
            Q+FNE ++R+ +E ++FKGI  N +F+ ++  T+  QI+II+FLG FASTT L    W  S+ +GF+  P+A   K IPV
Sbjct:  936 QVFNEVSSREMEEIDVFKGILDNYVFVVVIGATVFFQIIIIEFLGTFASTTPLTIVQWFFSIFVGFLGMPIAAGLKKIPV 1015          
BLAST of CN185380 vs. ExPASy Swiss-Prot
Match: ACA3_ORYSJ (Calcium-transporting ATPase 3, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os01g0939100 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  159 DGLTNR*LFEM----QIFNEFNARKPDEKNLFKGITKNRLFMGIVAVTLVLQILIIQFLGKFASTTRLNWKHWIISVVIGFISGPLAILGKLIPV 431
            D L N  +F      Q+FNE N+R+ ++ N+F GI  + +F  +V VT   Q+++++ LG FA+T  L+ K W+ SV+IG +   +  + K IPV
Sbjct:  926 DSLLNTFVFNTFVFCQVFNEVNSREMEKINVFSGIFSSWIFSAVVGVTAGFQVIMVELLGTFANTVHLSGKLWLTSVLIGSVGLVIGAILKCIPV 1020          
The following BLAST results are available for this feature:
BLAST of CN185380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ACA6_ORYSJ1.887e-1443.75Probable calcium-transporting ATPase 6, plasma mem... [more]
ACA2_ARATH2.465e-1447.50Calcium-transporting ATPase 2, plasma membrane-typ... [more]
ACA1_ORYSJ4.204e-1442.50Calcium-transporting ATPase 1, plasma membrane-typ... [more]
ACA2_ORYSJ1.223e-1340.00Calcium-transporting ATPase 2, plasma membrane-typ... [more]
ACA7_ARATH2.087e-1345.00Putative calcium-transporting ATPase 7, plasma mem... [more]
ACA3_ORYSJ5.682e-1136.84Calcium-transporting ATPase 3, plasma membrane-typ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001E01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185380 ID=CN185380; Name=CN185380; organism=Citrus sinensis; type=EST; length=654bp
AGGAAAAAGGACAGCACATTCTACAAAGGCTGAAATATTGACAAACCAAG
TGATCCAGATGAATCCGGGCACCTTCCCATTGGTTAACTTTCCTAATTTC
TTTGTTGAGAACGTCTTCTTTTGAATATATTGAAGATATTACTGAAGGGA
GTTGCTGGCACAGGTATCAATTTCCCCAGAATAGCGAGGGGCCCACTGAT
GAAGCCAATGACGACAGAAATAATCCAGTGCTTCCAATTAAGCCTGGTAG
TTGATGCGAACTTCCCAAGAAACTGAATGATAAGTATCTGAAGTACAAGA
GTTACTGCCACTATCCCCATAAAAAGACGGTTCTTAGTAATTCCTTTGAA
AAGATTTTTTTCATCGGGCTTCCGAGCATTAAATTCATTAAAGATCTGCA
TTTCAAACAATTACCTGTTTGTCAGGCCATCCAATTTTATGACAGTTACA
AACCAACAATGCCGGGAAAAAAAACACTTCTAGCAGTGACAATGCTAGCA
GCATCAAGCTGCCCTCGAAACCACAACAAACAGAAGCTCAACTTAACAAA
TTATTGTATTCCCTGATGATTTACTAACCTGGCAAAGGACAAAAGAATTG
AATATCAGAGTATTTTTTACTTTGTTGGAATGGGCATTGGAATCACTCTC
CAGG
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