CN185247

Overview
NameCN185247
Unique NameCN185247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2542 contig Csv1_Contig2542:360..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185247 vs. ExPASy Swiss-Prot
Match: GPX3_YEAST (Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=HYR1 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.841e-31
Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 367
            Y EL  LY +YK++G  I+ FPCNQFG QEPG +E+I +F    +   FPI  K+DVNG N  P+YK LKS K G+ G   IKWNF KFLVDK+G V ERY+  T P S+ + I++LL+
Sbjct:   42 YKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK 160          
BLAST of CN185247 vs. ExPASy Swiss-Prot
Match: GPX4_PONPY (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Pongo pygmaeus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 3.141e-31
Identity = 67/119 (56.30%), Postives = 86/119 (72.27%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 352
            T  NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEKD+
Sbjct:   76 TEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of CN185247 vs. ExPASy Swiss-Prot
Match: GPX4_HUMAN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Homo sapiens GN=GPX4 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 3.141e-31
Identity = 67/119 (56.30%), Postives = 86/119 (72.27%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 352
            T  NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEKD+
Sbjct:   76 TEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of CN185247 vs. ExPASy Swiss-Prot
Match: GPX1_SCHMA (Glutathione peroxidase OS=Schistosoma mansoni GN=GPX1 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 4.102e-31
Identity = 61/122 (50.00%), Postives = 86/122 (70.49%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 367
            T+ NY +L +++ +   +GL ILAFPCNQFG QEP    +I++F   ++  +F +F K+ VNG +A  LYK LKS + G   ++IKWNFSKFLVD++G  V+RY+PTT+P  IE DI +LLE
Sbjct:   46 TDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLE 167          
BLAST of CN185247 vs. ExPASy Swiss-Prot
Match: GPX4_MACFU (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Macaca fuscata fuscata GN=GPX4 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 9.138e-31
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 352
            T  NYT+L  L+ +Y   G+ ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEKD+
Sbjct:   76 TEVNYTQLVDLHARYAECGVRILAFPCNQFGKQEPGSNEKIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of CN185247 vs. ExPASy Swiss-Prot
Match: GPX4_BOVIN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Bos taurus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 9.138e-31
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 352
            T+ NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N +I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEKD+
Sbjct:   76 TDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNAEIKEFA-AGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of CN185247 vs. ExPASy Swiss-Prot
Match: GPX4_CEBAP (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Cebus apella GN=GPX4 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.559e-30
Identity = 66/119 (55.46%), Postives = 85/119 (71.43%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 352
            T  NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEKD+
Sbjct:   76 TEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of CN185247 vs. ExPASy Swiss-Prot
Match: GPO_LACLM (Glutathione peroxidase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gpo PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.559e-30
Identity = 59/114 (51.75%), Postives = 79/114 (69.30%), Query Frame = 2
Query:   23 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 364
            L +LY+ YK+QGLEIL FPCNQF  Q+ G+N +I EF    +   F +F K+ VNG  A PLY+ LK    G    +IKWNF+KFL+D++G V+ER+AP T P  +E++IKKLL
Sbjct:   44 LEKLYETYKDQGLEILGFPCNQFANQDAGENTEINEFCQLNYGVTFTMFQKIKVNGKEAHPLYQFLKKEAKGALSGTIKWNFTKFLIDRDGQVIERFAPKTEPEEMEEEIKKLL 157          
BLAST of CN185247 vs. ExPASy Swiss-Prot
Match: GPX4_CALJA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Callithrix jacchus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.659e-30
Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 352
            T  NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G  G++IKWNF+KFLVDK G VV+RY P   P  IEKD+
Sbjct:   76 TQVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGTLGNAIKWNFTKFLVDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of CN185247 vs. ExPASy Swiss-Prot
Match: GPX4_HYLLA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Hylobates lar GN=GPX4 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.535e-30
Identity = 65/119 (54.62%), Postives = 84/119 (70.59%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 352
            T  NYT+L  L+ +Y   GL  LAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL DK G VV+RY P   PL +EKD+
Sbjct:   76 TEVNYTQLVDLHARYAECGLRFLAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLFDKNGCVVKRYGPMEEPLVLEKDL 193          
The following BLAST results are available for this feature:
BLAST of CN185247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
GPX3_YEAST1.841e-3152.94Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=... [more]
GPX4_PONPY3.141e-3156.30Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_HUMAN3.141e-3156.30Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX1_SCHMA4.102e-3150.00Glutathione peroxidase OS=Schistosoma mansoni GN=G... [more]
GPX4_MACFU9.138e-3155.46Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_BOVIN9.138e-3155.46Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_CEBAP1.559e-3055.46Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPO_LACLM1.559e-3051.75Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
GPX4_CALJA2.659e-3056.30Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_HYLLA4.535e-3054.62Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185247 ID=CN185247; Name=CN185247; organism=Citrus sinensis; type=EST; length=430bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGT
TGTTGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGATA
TAAAGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCATGATCA
GCTTCTTGCTAATAAAACTAGAGTATCATG
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