CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.350e-58
Identity = 113/195 (57.95%), Postives = 155/195 (79.49%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED VEN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGANP+ + RGI+K +  LV ++ + ++++EDS+ +A V A+SAGN+ EVG MIAEAM KVG++GV++LEEGKS +  L + EGM+F
Sbjct:    2 AKRIIYNEN--ARRALEKGMDILAESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHVENTGVSLIRQAASKTNDAAGDGTTTATVLAHAMVKEGLRNVAAGANPIALKRGIDKAAGFLVEKIAEHARQIEDSKAIAQVGAISAGNDEEVGKMIAEAMDKVGKEGVISLEEGKSMQTELEITEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_THEEB (60 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groL PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.419e-58
Identity = 114/195 (58.46%), Postives = 155/195 (79.49%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGANP+ + RGI+K ++ LV ++ + ++ VEDS+ +A VAA+SAGN+ EVG MIA+AM KVG++GV++LEEGKS    L V EGM+F
Sbjct:    2 AKRIIYNEN--ARRALEKGMDILAESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKEGLRNVAAGANPIALKRGIDKATQFLVEKIAEHARPVEDSKAIAQVAAISAGNDEEVGRMIADAMDKVGKEGVISLEEGKSMTTELEVTEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CHLT3 (60 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groL PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.690e-58
Identity = 112/196 (57.14%), Postives = 151/196 (77.04%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++HF+ +G     L+ GV+KLAD V VTLGP GRNV+++ K+GAP +  DGVTVAKEVELEDPVEN+GA++VR+ A+KT+D+AGDGTTT+ VLAQ +  EG+K V AGANP+ + RGI+K    ++ ELK++S+ + D  E+A V  +SA N+ E+G++IAEAM KVG+ GV+T+EE K  E  L VVEGMQF
Sbjct:    2 AAKEIHFDAEG--RNALKRGVDKLADAVKVTLGPAGRNVIIDKKFGAPTVTKDGVTVAKEVELEDPVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVTAGANPMDLKRGIDKAVTGVIIELKKISRPIADKKEIAQVGCISANNDSEIGDLIAEAMEKVGKDGVITVEEAKGTETELKVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_ANATD (60 kDa chaperonin OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=groL PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.690e-58
Identity = 113/196 (57.65%), Postives = 156/196 (79.59%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+++  A + L+ GVNKLAD V VTLGPKGRNVVLE K+G+P+IVNDGVT+AKE+ELEDP EN+GA++VR+ A+KTND+AGDGTTT+ VLAQ +I EG+K +AAGANP+++ +GI+K    +V E+++MSK+V   E +  VA++SAG+  E+G ++A+AM KV   GV+T+EE K+ E  L +VEGMQF
Sbjct:    2 AAKMILFDEE--ARRALERGVNKLADTVKVTLGPKGRNVVLEKKFGSPQIVNDGVTIAKEIELEDPFENMGAQIVREVASKTNDIAGDGTTTATVLAQAMIREGLKNIAAGANPMILRKGIQKAVDVVVEEIRKMSKKVRGKEDITYVASISAGDE-EIGKLVADAMEKVTNDGVITVEESKTTETTLEIVEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_ANAVT (60 kDa chaperonin 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.653e-57
Identity = 113/195 (57.95%), Postives = 153/195 (78.46%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGAN +L+ RGI+K +  LV  +K+ ++ VEDS+ +A V ++SAGN+ EVG MIAEAM KVG++GV++LEEGKS    L + EGM+F
Sbjct:    2 AKRIIYNEN--ARRALERGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAIVKEGLRNVAAGANAILLKRGIDKATGFLVDRIKEHARPVEDSKSIAQVGSISAGNDDEVGQMIAEAMDKVGKEGVISLEEGKSVTTELEITEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_ANASP (60 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 7120) GN=groL1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.653e-57
Identity = 113/195 (57.95%), Postives = 153/195 (78.46%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGAN +L+ RGI+K +  LV  +K+ ++ VEDS+ +A V ++SAGN+ EVG MIAEAM KVG++GV++LEEGKS    L + EGM+F
Sbjct:    2 AKRIIYNEN--ARRALERGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAIVKEGLRNVAAGANAILLKRGIDKATGFLVDRIKEHARPVEDSKSIAQVGSISAGNDDEVGQMIAEAMDKVGKEGVISLEEGKSVTTELEITEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_THEVL (60 kDa chaperonin 1 OS=Thermosynechococcus vulcanus GN=groL1 PE=3 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 3.682e-57
Identity = 113/195 (57.95%), Postives = 154/195 (78.97%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGANP+ + RGI+K ++ LV ++ + ++ VEDS+ +A VAA+SAGN+ EVG MIA+AM KVG++GV++LEE KS    L V EGM+F
Sbjct:    2 AKRIIYNEN--ARRALEKGMDILAESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKEGLRNVAAGANPIALKRGIDKATQFLVEKIAEHARPVEDSKAIAQVAAISAGNDEEVGRMIADAMDKVGKEGVISLEEAKSMTTELEVTEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.682e-57
Identity = 112/187 (59.89%), Postives = 151/187 (80.75%), Query Frame = 3
Query:  294 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            D  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELE+ +EN GA+L+++ A+KTND+AGDGTTT+ VLAQ L+ EG+K VAAG+NP+ + RG+EKT + LV+EL++++K VE S+ +A VAAVSAGN+ E+G MIA AM  VG++GV+T+EE KS    L V EGMQF
Sbjct:    8 DETARRALERGIDALANAVRVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELENKLENTGAQLIKEVASKTNDVAGDGTTTACVLAQSLVKEGLKNVAAGSNPMNLKRGMEKTVRHLVAELEKVAKPVEGSQAIAQVAAVSAGNDDEIGEMIARAMETVGKEGVITVEESKSLTTELEVTEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_HALOH (60 kDa chaperonin OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.809e-57
Identity = 115/195 (58.97%), Postives = 152/195 (77.95%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK+L F++D  A + L+ GV+ LA+ V VTLGPKGRNVVLE  +GAP I NDGV++A+E+ELE+  EN+GA+ V++ A KTND+AGDGTTT+ VLAQ +  EG+K VAAGANP+++ RGIEK  + LV E+K++SK VE  E ++ VAA+SAGN+ EVG +IAEAM KVG+ GV+++EE KS    L VVEGMQF
Sbjct:    2 AKELKFSED--ARRALERGVDTLANAVKVTLGPKGRNVVLEKSFGAPTITNDGVSIAREIELENHYENMGAQTVKEVATKTNDVAGDGTTTATVLAQAIFKEGLKNVAAGANPMILKRGIEKAVQKLVEEIKELSKPVEGKEAVSQVAAISAGNDEEVGKLIAEAMEKVGQDGVISVEESKSMGTSLDVVEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_FUSNN (60 kDa chaperonin OS=Fusobacterium nucleatum subsp. nucleatum GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.809e-57
Identity = 112/195 (57.44%), Postives = 152/195 (77.95%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK ++FN +  A KKL+ GVN LAD V VTLGP+GRNVVLE  YGAP I NDGVT+AKE+ELEDP EN+GA LV++ A K+ND+AGDGTTT+ +LAQ ++ EG+K+++AGANP+ + +GIE  +K  V  LK  +K++E + E++ VA++SAG+  E+G +IA+AM+KVG  GV+T+EE KS E  L +VEGMQF
Sbjct:    2 AKIINFNDE--ARKKLEIGVNTLADAVKVTLGPRGRNVVLEKSYGAPLITNDGVTIAKEIELEDPFENMGAALVKEVAIKSNDVAGDGTTTATILAQAIVKEGLKMLSAGANPIFLKKGIELAAKEAVEVLKDKAKKIESNEEISQVASISAGDE-EIGKLIAQAMAKVGETGVITVEEAKSLETTLEIVEGMQF 193          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_TRIEI4.350e-5857.9560 kDa chaperonin 2 OS=Trichodesmium erythraeum (s... [more]
CH60_THEEB7.419e-5858.4660 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH60_CHLT39.690e-5857.1460 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]
CH60_ANATD9.690e-5857.6560 kDa chaperonin OS=Anaerocellum thermophilum (st... [more]
CH601_ANAVT1.653e-5757.9560 kDa chaperonin 1 OS=Anabaena variabilis (strain... [more]
CH601_ANASP1.653e-5757.9560 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 71... [more]
CH601_THEVL3.682e-5757.9560 kDa chaperonin 1 OS=Thermosynechococcus vulcanu... [more]
CH601_GLOVI3.682e-5759.8960 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH60_HALOH4.809e-5758.9760 kDa chaperonin OS=Halothermothrix orenii (strai... [more]
CH60_FUSNN4.809e-5757.4460 kDa chaperonin OS=Fusobacterium nucleatum subsp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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