CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LEPIC (60 kDa chaperonin OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=groL PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.399e-56
Identity = 109/195 (55.90%), Postives = 153/195 (78.46%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ +N+   A +KL  GVNKLA+ V VTLGPKGRNVV++ K+GAP I  DGVTVAKE+ELEDP+EN+GA++V++ + KTND+AGDGTTT+ +LAQ +I EG+K V AGANP+ + +GI+K   A V  +++ + ++E+  ++A+VA++SA N+  +GN+IA+AM KVG+ GV+T+EE KS E  L VVEGMQF
Sbjct:    2 AKDIEYNET--ARRKLLEGVNKLANAVKVTLGPKGRNVVIDKKFGAPTITKDGVTVAKEIELEDPLENMGAQMVKEVSTKTNDVAGDGTTTATILAQSIINEGLKNVTAGANPMSLKKGIDKAVTAAVESIQKRAVKIENKKDIANVASISANNDNTIGNLIADAMDKVGKDGVITVEEAKSIETTLDVVEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_HELMI (60 kDa chaperonin OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=groL PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.399e-56
Identity = 115/195 (58.97%), Postives = 152/195 (77.95%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + FN++  A + L+ GVN LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELE+P+EN+GA+LV++ A KTND+AGDGTTT+ +LAQ +I EG+K VAAGANP+++ RGIEK  +  V+E+K ++K VE  E +A VAA+SAG +  +GN+IAEAM KVG+ GV+T+EE K     L VVEGM F
Sbjct:    2 AKMIVFNEE--ARRALEKGVNTLAEAVRVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELENPIENMGAQLVKEVATKTNDVAGDGTTTATILAQAIIREGMKNVAAGANPMVLKRGIEKAVEKAVAEIKAIAKPVESKEAIAQVAAISAG-DATIGNLIAEAMEKVGKDGVITVEESKGFTTDLEVVEGMNF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_GEOTN (60 kDa chaperonin OS=Geobacillus thermodenitrificans (strain NG80-2) GN=groL PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.399e-56
Identity = 119/195 (61.03%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK++ F+++  A + +  GV+KLAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK     V ELK +SK ++  E +A VAA+SA +  EVG +IAEAM +VG  GV+TLEE K     L VVEGMQF
Sbjct:    2 AKEIKFSEE--ARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAISAADE-EVGQLIAEAMERVGNDGVITLEESKGFTTELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_FUSNP (60 kDa chaperonin OS=Fusobacterium nucleatum subsp. polymorphum GN=groL PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.399e-56
Identity = 111/195 (56.92%), Postives = 151/195 (77.44%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK ++FN +  A KKL+ GVN LAD V VTLGP+GRNVVLE  YGAP I NDGVT+AKE+ELEDP EN+GA LV++ A K+ND+AGDGTTT+ +LAQ ++ EG+K+++AGANP+ + +GIE  +K  +  LK  +K++E + E++ VA++SAG+  E+G +IA+AM+KVG  GV+T+EE KS E  L  VEGMQF
Sbjct:    2 AKIINFNDE--ARKKLEIGVNTLADAVKVTLGPRGRNVVLEKSYGAPLITNDGVTIAKEIELEDPFENMGAALVKEVAIKSNDVAGDGTTTATILAQAIVKEGLKMLSAGANPIFLKKGIELAAKEAIDVLKDKAKKIESNEEISQVASISAGDE-EIGKLIAQAMAKVGETGVITVEEAKSLETTLETVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 219.55 bits (558), Expect = 1.827e-56
Identity = 110/195 (56.41%), Postives = 152/195 (77.95%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N +  A + L+ G++ LA+ V VTLGPKGRNVVLE K+G+P+I+NDG+T+AKE+ELED VEN G  L+RQAA+KTND+AGDGTTT+ VLA  ++ EG++ VAAGANP+ + RGI+K +  LV+ +K+ ++ V DS+ +A V A+SAGN+ EVG MIA AM KVG++GV++LEEGKS    L + EGM+F
Sbjct:    2 AKSIIYNDE--ARRALERGMDILAEAVAVTLGPKGRNVVLEKKFGSPQIINDGITIAKEIELEDHVENTGVSLIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANPISLKRGIDKATDFLVARIKEHAQPVGDSKAIAQVGAISAGNDEEVGQMIANAMDKVGQEGVISLEEGKSMTTELEITEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LACDB (60 kDa chaperonin OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=groL PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.387e-56
Identity = 116/195 (59.49%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F++D  A + L NGVNKLA+ V  TLGPKGRNVVLE  YGAP I NDGVT+AK +ELED  ENIGAKLV +AA+KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I RGIEK +KA V +L + S +V    ++A VA++S+ +  E+G++IAEAM KVG+ GV+T+E+ +  E  L VVEGMQF
Sbjct:    2 AKDIKFSED--ARRSLLNGVNKLANTVKTTLGPKGRNVVLEQSYGAPTITNDGVTIAKAIELEDHYENIGAKLVAEAASKTNDIAGDGTTTATVLTQAIVQEGMKNVVAGANPVGIRRGIEKATKAAVDQLHKNSHKVSSRDQIAQVASISSASK-EIGDLIAEAMEKVGKDGVITIEDSRGIETELSVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LACDA (60 kDa chaperonin OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=groL PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.387e-56
Identity = 116/195 (59.49%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F++D  A + L NGVNKLA+ V  TLGPKGRNVVLE  YGAP I NDGVT+AK +ELED  ENIGAKLV +AA+KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I RGIEK +KA V +L + S +V    ++A VA++S+ +  E+G++IAEAM KVG+ GV+T+E+ +  E  L VVEGMQF
Sbjct:    2 AKDIKFSED--ARRSLLNGVNKLANTVKTTLGPKGRNVVLEQSYGAPTITNDGVTIAKAIELEDHYENIGAKLVAEAASKTNDIAGDGTTTATVLTQAIVQEGMKNVVAGANPVGIRRGIEKATKAAVDQLHKNSHKVSSRDQIAQVASISSASK-EIGDLIAEAMEKVGKDGVITIEDSRGIETELSVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_GEOKA (60 kDa chaperonin OS=Geobacillus kaustophilus GN=groL PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.387e-56
Identity = 119/195 (61.03%), Postives = 147/195 (75.38%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + F+++  A + +  GV+KLAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK     V ELK +SK ++  E +A VAA+SA +  EVG +IAEAM +VG  GV+TLEE K     L VVEGMQF
Sbjct:    2 AKQIKFSEE--ARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAISAADE-EVGQLIAEAMERVGNDGVITLEESKGFTTELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.387e-56
Identity = 111/196 (56.63%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMS-KEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK+LHFN D  A   L+ GV++LA+ V VTLGPKGRNVV++ K+GAP +  DGVTVAKE+EL DP+EN+GA++V++ A KT+DLAGDGTTT+ VLAQ +  EG+K V AG+NP+ + RGIEK    +V ELK++S       E+A V  +SA N+ E+GN+IAEAM KVG+ GV+T+EE K  E  L  V+GMQF
Sbjct:    2 AAKELHFNVDARAA--LKRGVDQLAEAVKVTLGPKGRNVVIDKKFGAPTVTKDGVTVAKEIELADPIENMGAQMVKEVATKTSDLAGDGTTTATVLAQAIFREGLKNVTAGSNPMALKRGIEKAVAGIVEELKRISVPTTGKKEIAQVGTISANNDPEIGNLIAEAMEKVGKDGVITVEEAKGLETTLETVDGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_BACP3 (60 kDa chaperonin OS=Bacillus PS3 GN=groL PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.387e-56
Identity = 119/195 (61.03%), Postives = 147/195 (75.38%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + F+++  A + +  GV+KLAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK     V ELK +SK ++  E +A VAA+SA +  EVG +IAEAM +VG  GV+TLEE K     L VVEGMQF
Sbjct:    2 AKQIKFSEE--ARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAISAADE-EVGQLIAEAMERVGNDGVITLEESKGFTTELDVVEGMQF 193          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LEPIC1.399e-5655.9060 kDa chaperonin OS=Leptospira interrogans serogr... [more]
CH60_HELMI1.399e-5658.9760 kDa chaperonin OS=Heliobacterium modesticaldum ... [more]
CH60_GEOTN1.399e-5661.0360 kDa chaperonin OS=Geobacillus thermodenitrifica... [more]
CH60_FUSNP1.399e-5656.9260 kDa chaperonin OS=Fusobacterium nucleatum subsp... [more]
CH601_SYNY31.827e-5656.4160 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH60_LACDB2.387e-5659.4960 kDa chaperonin OS=Lactobacillus delbrueckii sub... [more]
CH60_LACDA2.387e-5659.4960 kDa chaperonin OS=Lactobacillus delbrueckii sub... [more]
CH60_GEOKA2.387e-5661.0360 kDa chaperonin OS=Geobacillus kaustophilus GN=g... [more]
CH60_GEMAT2.387e-5656.6360 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH60_BACP32.387e-5661.0360 kDa chaperonin OS=Bacillus PS3 GN=groL PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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