CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_METPP (60 kDa chaperonin OS=Methylibium petroleiphilum (strain PM1) GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 108/196 (55.10%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F   G A  ++  GVN LA+ V VTLGPKGRNVVLE  +GAP +  DGV+VAKE+EL+D ++N+GA++V++ A+KT+D AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   +LV +LK+ SK    S E+A V  +SA ++ +VG +IA AM KVG++GV+T+E+GKS  N L VVEGMQF
Sbjct:    2 AAKDVVFG--GEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQAIVREGMKYVAAGMNPMDLKRGIDKAVVSLVEQLKKQSKPTTTSKEIAQVGTISANSDDDVGQIIASAMDKVGKEGVITVEDGKSLNNELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_FRATT (60 kDa chaperonin OS=Francisella tularensis subsp. tularensis GN=groL PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 108/196 (55.10%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+ +  A  K+ +GVN LA+ V VTLGPKGRNVVL+  +G P I  DGV+VAKE+ELED  EN+GA++V++ A+KT D+AGDGTTT+ VLAQ L+ EG+K VAAG NP+ + RGI+K +  LV ELK +SK   D   +  V  +SA ++  VG +IA+AM+KVG++GV+T+EEGK  E+ L VVEGMQF
Sbjct:    2 AAKQVLFSDEARA--KMLDGVNTLANAVKVTLGPKGRNVVLDKSFGTPTITKDGVSVAKEIELEDKFENMGAQIVKEVASKTADVAGDGTTTATVLAQALLTEGLKAVAAGMNPMDLKRGIDKATARLVEELKALSKPCSDPKSIEQVGTISANSDATVGKLIADAMAKVGKEGVITVEEGKGFEDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_FRATO (60 kDa chaperonin OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 108/196 (55.10%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+ +  A  K+ +GVN LA+ V VTLGPKGRNVVL+  +GAP I  DGV+VAKE+ELED  EN+GA++V++ A+KT D+AGDGTTT+ VLAQ L+ EG+K V AG NP+ + RGI+K +  LV ELK +SK   D   +  V  +SA ++  VG +IA+AM+KVG++GV+T+EEGK  E+ L VVEGMQF
Sbjct:    2 AAKQVLFSDEARA--KMLDGVNTLANAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELEDKFENMGAQIVKEVASKTADVAGDGTTTATVLAQALLTEGLKAVTAGMNPMDLKRGIDKATARLVEELKALSKPCSDPKSIEQVGTISANSDATVGKLIADAMAKVGKEGVITVEEGKGFEDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_FRATH (60 kDa chaperonin OS=Francisella tularensis subsp. holarctica (strain LVS) GN=groL PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 108/196 (55.10%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+ +  A  K+ +GVN LA+ V VTLGPKGRNVVL+  +GAP I  DGV+VAKE+ELED  EN+GA++V++ A+KT D+AGDGTTT+ VLAQ L+ EG+K V AG NP+ + RGI+K +  LV ELK +SK   D   +  V  +SA ++  VG +IA+AM+KVG++GV+T+EEGK  E+ L VVEGMQF
Sbjct:    2 AAKQVLFSDEARA--KMLDGVNTLANAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELEDKFENMGAQIVKEVASKTADVAGDGTTTATVLAQALLTEGLKAVTAGMNPMDLKRGIDKATARLVEELKALSKPCSDPKSIEQVGTISANSDATVGKLIADAMAKVGKEGVITVEEGKGFEDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_FRATF (60 kDa chaperonin OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 108/196 (55.10%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+ +  A  K+ +GVN LA+ V VTLGPKGRNVVL+  +GAP I  DGV+VAKE+ELED  EN+GA++V++ A+KT D+AGDGTTT+ VLAQ L+ EG+K V AG NP+ + RGI+K +  LV ELK +SK   D   +  V  +SA ++  VG +IA+AM+KVG++GV+T+EEGK  E+ L VVEGMQF
Sbjct:    2 AAKQVLFSDEARA--KMLDGVNTLANAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELEDKFENMGAQIVKEVASKTADVAGDGTTTATVLAQALLTEGLKAVTAGMNPMDLKRGIDKATARLVEELKALSKPCSDPKSIEQVGTISANSDATVGKLIADAMAKVGKEGVITVEEGKGFEDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_FRAT1 (60 kDa chaperonin OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 108/196 (55.10%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK + F+ +  A  K+ +GVN LA+ V VTLGPKGRNVVL+  +G P I  DGV+VAKE+ELED  EN+GA++V++ A+KT D+AGDGTTT+ VLAQ L+ EG+K VAAG NP+ + RGI+K +  LV ELK +SK   D   +  V  +SA ++  VG +IA+AM+KVG++GV+T+EEGK  E+ L VVEGMQF
Sbjct:    2 AAKQVLFSDEARA--KMLDGVNTLANAVKVTLGPKGRNVVLDKSFGTPTITKDGVSVAKEIELEDKFENMGAQIVKEVASKTADVAGDGTTTATVLAQALLTEGLKAVAAGMNPMDLKRGIDKATARLVEELKALSKPCSDPKSIEQVGTISANSDATVGKLIADAMAKVGKEGVITVEEGKGFEDELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_EMIHU (60 kDa chaperonin, chloroplastic OS=Emiliania huxleyi GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 100/184 (54.35%), Postives = 143/184 (77.72%), Query Frame = 3
Query:  303 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            A K L+ G++ LA+ V VTLGPKGRNVVLE K+G P+IVNDGVT+AKE+ L+D +EN G  L+RQAA+KTND+AGDGTTT+ VLA  +I +G++ VAAGANP+++ RGIEK ++ +V ++   ++ +E+ +++  VA +SAGN+ EVG++IA A+ KVGR+G+++LEE KS    L + EGM F
Sbjct:   12 ARKALERGMDILAEAVSVTLGPKGRNVVLEKKFGTPQIVNDGVTIAKEINLQDTLENTGVSLIRQAASKTNDVAGDGTTTATVLAYAIIKQGMRNVAAGANPIVLKRGIEKATQFVVRKIMDYARPIENLTDITQVAQISAGNDAEVGSLIANAIDKVGREGLISLEESKSTATELEITEGMGF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_DEIGD (60 kDa chaperonin OS=Deinococcus geothermalis (strain DSM 11300) GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 106/194 (54.64%), Postives = 142/194 (73.20%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK L F  D +A + L+ GVN +A+ V VTLGP+GRNVV+E K+G+P I  DGVTVAKEVELED +ENIGA+L+++ A+KTND+ GDGTTT+ VL Q ++ EG++ VAAGANP+ + RGIEK   A   E+K+++  VEDS      A  + N+ +VG  IA AM KVG++GV+T+EE KS +  + VVEGMQF
Sbjct:    2 AKQLVF--DEHARRSLERGVNAVANAVKVTLGPRGRNVVIEKKFGSPTITKDGVTVAKEVELEDKLENIGAQLLKEIASKTNDITGDGTTTATVLGQAIVKEGLRNVAAGANPLALKRGIEKAVAAATEEIKKLAVPVEDSNAIKKVAGISANDAQVGEEIANAMDKVGKEGVITIEESKSFDTEVDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CHLTA (60 kDa chaperonin OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=groL PE=2 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 104/195 (53.33%), Postives = 147/195 (75.38%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK++ +N++  A KK+Q GV  LA+ V VTLGPKGR+VV++  +G+P++  DGVTVAKEVEL D  EN+GA++V++ A+KT D AGDGTTT+ VLA+ +  EG++ V AGANP+ + RGI+K  K +V ++K++SK V+   E+A VA +SA N+ E+GN+IAEAM KVG+ G +T+EE K  E +L VVEGM F
Sbjct:    3 AKNIKYNEE--ARKKIQKGVKTLAEAVKVTLGPKGRHVVIDKSFGSPQVTKDGVTVAKEVELADKHENMGAQMVKEVASKTADKAGDGTTTATVLAEAIYTEGLRNVTAGANPMDLKRGIDKAVKVVVDQIKKISKPVQHHKEIAQVATISANNDAEIGNLIAEAMEKVGKNGSITVEEAKGFETVLDVVEGMNF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CHLMU (60 kDa chaperonin OS=Chlamydia muridarum GN=groL PE=2 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 2.091e-52
Identity = 104/195 (53.33%), Postives = 147/195 (75.38%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK++ +N++  A KK+Q GV  LA+ V VTLGPKGR+VV++  +G+P++  DGVTVAKEVEL D  EN+GA++V++ A+KT D AGDGTTT+ VLA+ +  EG++ V AGANP+ + RGI+K  K +V ++K++SK V+   E+A VA +SA N+ E+GN+IAEAM KVG+ G +T+EE K  E +L VVEGM F
Sbjct:    3 AKNIKYNEE--ARKKIQKGVKTLAEAVKVTLGPKGRHVVIDKSFGSPQVTKDGVTVAKEVELADKHENMGAQMVKEVASKTADKAGDGTTTATVLAEAIYTEGLRNVTAGANPMDLKRGIDKAVKVVVDQIKKISKPVQHHKEIAQVATISANNDAEIGNLIAEAMEKVGKNGSITVEEAKGFETVLDVVEGMNF 195          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_METPP2.091e-5255.1060 kDa chaperonin OS=Methylibium petroleiphilum (s... [more]
CH60_FRATT2.091e-5255.1060 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATO2.091e-5255.1060 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATH2.091e-5255.1060 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATF2.091e-5255.1060 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRAT12.091e-5255.1060 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_EMIHU2.091e-5254.3560 kDa chaperonin, chloroplastic OS=Emiliania huxl... [more]
CH60_DEIGD2.091e-5254.6460 kDa chaperonin OS=Deinococcus geothermalis (str... [more]
CH60_CHLTA2.091e-5253.3360 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH60_CHLMU2.091e-5253.3360 kDa chaperonin OS=Chlamydia muridarum GN=groL P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
back to top