CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_ANOFW (60 kDa chaperonin OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=groL PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.317e-56
Identity = 117/195 (60.00%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK++ F+++  A + +  GV+KLAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ I +GIEK     V ELK +SK +E  + +A VAA+SA +  EVG +IAEAM +VG+ GV+TLEE K     L VVEGMQF
Sbjct:    2 AKEIKFSEE--ARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGIRKGIEKAVAVAVEELKAISKPIEGKDSIAQVAAISAADE-EVGQLIAEAMERVGKDGVITLEESKGFTTELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_UNCTG (60 kDa chaperonin OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=groL PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.944e-56
Identity = 112/195 (57.44%), Postives = 155/195 (79.49%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK L ++ +  A K +++GV+KLA+ V +TLGPKGR VVL+ K+GAP I NDGVT+AKE+ELEDP EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ LI EG+K + AGAN   I +GIEK   A + E+K+++K+V++  E+A +A++SA +  E+GN+IA+AM KVG+ GV+T+EEGKS+E  L VVEGMQF
Sbjct:    2 AKQLIYSDE--ARKAMKSGVDKLANAVKITLGPKGRYVVLDKKFGAPTITNDGVTIAKEIELEDPFENMGAQLVKEVASKTNDIAGDGTTTATVLAQSLINEGLKNITAGANANHIKKGIEKAVAAAIDEIKKIAKQVKNKGEIAQIASISASDK-EIGNLIADAMEKVGKDGVITVEEGKSSETTLDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.944e-56
Identity = 110/187 (58.82%), Postives = 145/187 (77.54%), Query Frame = 3
Query:  294 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            D  A   L  G++ +AD V +TLGPKGRNVVLE K+GAP I NDGVT+AKE++LEDP EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ L+ EG+K V AGANP+ + RGIEK  + +V ELK+++K VE   ++A VAA+SA N+ E+GN+IAEAM KVG+ GV+T+EE +     L +VEGMQF
Sbjct:    9 DMQARTALIRGLDIVADTVKITLGPKGRNVVLEKKFGAPVITNDGVTIAKEIDLEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQALVHEGMKHVVAGANPMYVRRGIEKAVEKVVEELKKIAKPVETKQDIAHVAAISANNDTEIGNLIAEAMDKVGKDGVITVEESQGITTTLELVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 217.624 bits (553), Expect = 6.944e-56
Identity = 107/180 (59.44%), Postives = 142/180 (78.89%), Query Frame = 3
Query:  309 KKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQ 848
            + L+ G+N LAD V +TLGPKGRNV+LE +YGAP+IVNDG+TVAKE+EL +P EN GAKL+++ A+KT ++AGDGTTT+ ++AQ L+ EG++ VAAGANPV + RGIEK +  LV E++ ++K VE S +A VA VS+GN+ EVG MIA+AM KV + GV+T+EE KS    L VVEGMQ
Sbjct:   13 RSLEAGINALADAVRITLGPKGRNVLLEKQYGAPQIVNDGITVAKEIELSNPEENAGAKLIQEVASKTKEIAGDGTTTATIIAQALVREGLRNVAAGANPVALRRGIEKVTTFLVQEIEAVAKPVEGSAIAQVATVSSGNDPEVGAMIADAMDKVTKDGVITVEESKSLNTELEVVEGMQ 192          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_RHILO (60 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.944e-56
Identity = 111/196 (56.63%), Postives = 149/196 (76.02%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAK++ F+ D  A +K+  GVN LAD V VTLGPKGRNVV++  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+ A+KT+DLAGDGTTT+ VLAQ ++ EG K VA+G NP+ + RGI+K  +A+V ELK  +++V  + E+A V  +SA  + E+G  +AEAM KVG +GV+T+EE K+AE  L VVEGMQF
Sbjct:    2 AAKEVKFHSD--AREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTSDLAGDGTTTATVLAQAIVKEGAKAVASGMNPMDLKRGIDKAVEAIVQELKTNARKVTRNDEIAQVGTISANGDAEIGRFLAEAMQKVGNEGVITVEEAKTAETELEVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_BACTR (60 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groL PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.070e-56
Identity = 117/195 (60.00%), Postives = 147/195 (75.38%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK++ F+++  A + +  GV+KLAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ I +GIEK     V ELK +SK ++  E +A VAA+SA +  EVG +IAEAM +VG  GV+TLEE K     L VVEGMQF
Sbjct:    2 AKEIKFSEE--ARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGIRKGIEKAVAVAVEELKAISKPIQGKESIAQVAAISAADE-EVGQLIAEAMERVGNDGVITLEESKGFTTELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_BACST (60 kDa chaperonin OS=Bacillus stearothermophilus GN=groL PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.070e-56
Identity = 117/195 (60.00%), Postives = 147/195 (75.38%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK++ F+++  A + +  GV+KLAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ I +GIEK     V ELK +SK ++  E +A VAA+SA +  EVG +IAEAM +VG  GV+TLEE K     L VVEGMQF
Sbjct:    2 AKEIKFSEE--ARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGIRKGIEKAVAVAVEELKAISKPIQGKESIAQVAAISAADE-EVGQLIAEAMERVGNDGVITLEESKGFATELDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_ALKMQ (60 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groL PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.070e-56
Identity = 113/195 (57.95%), Postives = 149/195 (76.41%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK++ F +   A + L+ GVNKLAD V VTLGPKGRNVV++ K+G+P I NDGVT+A+E+ELED  EN+GA+LV++ A KTND+AGDGTTT+ +LAQ +I EG+K VAAGANP++I +GI K   A V+ELK +SK +E  E +A V A+SA +  E+G +IA+AM KVG+ GV+T+EE KS    L VVEGMQF
Sbjct:    2 AKEIRFGEK--ARRSLEAGVNKLADTVKVTLGPKGRNVVIDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVAAGANPMIIKKGIHKAVDAAVAELKAVSKSIESKEAIAQVGAISAADE-EIGQLIADAMDKVGKDGVITVEESKSMGTTLDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_NEIMF (60 kDa chaperonin OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=groL PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.185e-55
Identity = 112/196 (57.14%), Postives = 150/196 (76.53%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  +    +K+ NGVN LA+ V VTLGPKGRNVV++  +G P I  DGVTVAKE+EL+D  EN+GA++V++ A+KTND+AGDGTTT+ VLAQ ++AEG+K V AG NP  + RGI+K   ALV ELK ++K  + S E+A V ++SA ++ +VG +IAEAM KVG++GV+T+E+GKS EN L VVEGMQF
Sbjct:    2 AAKDVQFGNE--VRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_NEIMB (60 kDa chaperonin OS=Neisseria meningitidis serogroup B GN=groL PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.185e-55
Identity = 112/196 (57.14%), Postives = 150/196 (76.53%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F  +    +K+ NGVN LA+ V VTLGPKGRNVV++  +G P I  DGVTVAKE+EL+D  EN+GA++V++ A+KTND+AGDGTTT+ VLAQ ++AEG+K V AG NP  + RGI+K   ALV ELK ++K  + S E+A V ++SA ++ +VG +IAEAM KVG++GV+T+E+GKS EN L VVEGMQF
Sbjct:    2 AAKDVQFGNE--VRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVDELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQF 195          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ANOFW5.317e-5660.0060 kDa chaperonin OS=Anoxybacillus flavithermus (s... [more]
CH60_UNCTG6.944e-5657.4460 kDa chaperonin OS=Uncultured termite group 1 ba... [more]
CH60_DICT66.944e-5658.8260 kDa chaperonin OS=Dictyoglomus thermophilum (st... [more]
CH602_SYNY36.944e-5659.4460 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]
CH602_RHILO6.944e-5656.6360 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=... [more]
CH60_BACTR9.070e-5660.0060 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH60_BACST9.070e-5660.0060 kDa chaperonin OS=Bacillus stearothermophilus G... [more]
CH60_ALKMQ9.070e-5657.9560 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH60_NEIMF1.185e-5557.1460 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIMB1.185e-5557.1460 kDa chaperonin OS=Neisseria meningitidis serogr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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