CN185246

Overview
NameCN185246
Unique NameCN185246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_LEUMM (60 kDa chaperonin OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=groL PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.021e-55
Identity = 116/195 (59.49%), Postives = 144/195 (73.85%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK+L F++D  A  K++ GV+KLAD V  T+GPKGRNVVLE  YGAP I NDGVT+AK +ELED  EN+GAKLV + A+KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I  GIEK + A V++L +MS  V    E+A +A++SA N  EVG +IAEAM KVG  GV+T+EE K  E  L VVEGMQF
Sbjct:    2 AKELKFSEDARA--KMKAGVDKLADTVKTTIGPKGRNVVLEQSYGAPTITNDGVTIAKAIELEDHFENMGAKLVAEVASKTNDIAGDGTTTATVLTQAIVGEGLKNVTAGANPVGIRTGIEKATAAAVAKLHEMSHTVNTKDEIAQIASISAANE-EVGELIAEAMDKVGNDGVITIEESKGIETTLDVVEGMQF 193          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_DELAS (60 kDa chaperonin OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=groL PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.021e-55
Identity = 114/196 (58.16%), Postives = 149/196 (76.02%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F   G A  ++  GVN LA+ V VTLGPKGRNVVLE  +GAP +  DGV+VAKE+EL+D ++N+GA+LV++ A+KTND+AGDGTTT+ VLAQ ++ EG K VAAG NP+ + RGI+K   ALV ELK+ SK    S E+A V ++SA ++  VG++IAEAM KVG++GV+T+EEGKS  N L VVEGMQF
Sbjct:    2 AAKDVVFG--GEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQLVKEVASKTNDIAGDGTTTATVLAQAIVREGAKYVAAGLNPMDLKRGIDKAVAALVEELKKQSKATTTSKEIAQVGSISANSDESVGSIIAEAMDKVGKEGVITVEEGKSLANELDVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_PSYIN (60 kDa chaperonin 2 OS=Psychromonas ingrahamii (strain 37) GN=groL2 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.021e-55
Identity = 109/195 (55.90%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            +K++ F  D  +  K+ NGVN LAD V +TLGPKGRNVV++  YGAP+I  DGVTVAKE+ELED  EN+GA++V+  A++TND AGDGTTT+ VLAQ +IA+G+K VAAG NP+ + RGI++T KA V+ELK++S    DS+ +  V  +SA +++E+G +IA AM KVG +GV+T+EEG+  E  L VVEGMQF
Sbjct:    2 SKEIKFGND--SRSKMLNGVNILADAVKITLGPKGRNVVIDKSYGAPQITKDGVTVAKEIELEDKFENMGAQMVKDVASQTNDAAGDGTTTATVLAQAIIADGLKAVAAGMNPMDLKRGIDQTVKAAVAELKKLSTPCSDSKAITQVGTISANSDHEIGEIIARAMQKVGNQGVITVEEGQGLETELDVVEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PSEPG (60 kDa chaperonin OS=Pseudomonas putida (strain GB-1) GN=groL PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.639e-55
Identity = 113/196 (57.65%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F     A KK+  GVN LAD V  TLGPKGRNVVL   +GAP I  DGV+VAKE+EL+D  EN+GA+LV++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V+ELK +SK   DS+ +A V  +SA ++  +GN+IAEAM KVG++GV+T+EEG   EN L VVEGMQF
Sbjct:    2 AAKDVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNVVLAKSFGAPTITKDGVSVAKEIELKDAFENMGAQLVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATAAVVAELKNLSKPCADSKAIAQVGTISANSDDSIGNIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_PORPU (60 kDa chaperonin, chloroplastic OS=Porphyra purpurea GN=groL PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.639e-55
Identity = 105/184 (57.07%), Postives = 145/184 (78.80%), Query Frame = 3
Query:  303 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            A K L+ G++ L + V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ LED +EN G  L+RQAA+KTND+AGDGTTT+ VLA  ++ +G++ VAAG+NP+ I +GIEK +  +VS++ + +K VED + +  VA++S+GN+ EVG MIA+A+ +VGR+GV++LEEGKS    L + EGMQF
Sbjct:   11 ARKALEKGMDILTEAVSVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEISLEDHIENTGVALIRQAASKTNDVAGDGTTTATVLASAIVKQGMRNVAAGSNPMAIKKGIEKATNFVVSKIAEYAKPVEDTTAIVQVASISSGNDAEVGKMIADAIDRVGREGVISLEEGKSTSTSLEITEGMQF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_GALSU (60 kDa chaperonin, chloroplastic OS=Galdieria sulphuraria GN=groL PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.639e-55
Identity = 101/184 (54.89%), Postives = 146/184 (79.35%), Query Frame = 3
Query:  303 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            A K L+ G++ LA+ V VTLGPKGRNVV+E KYG P+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND+AGDGTTTS VLA  ++ +G++ VAAGANP+ + RGI+K ++ +++++ + S+ VED++ +  VA +S+GN+  +G MIA+A+ KVGR+GV+++EEGKS    L + EGM+F
Sbjct:   11 ARKALEKGIDILAEAVSVTLGPKGRNVVIEKKYGPPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTSTVLAHAIVKQGMRNVAAGANPIALKRGIDKATQFIINKISEYSRPVEDNKAITQVATISSGNDENIGKMIADAIEKVGREGVISIEEGKSTTTELEIKEGMKF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_CYAPA (60 kDa chaperonin, cyanelle OS=Cyanophora paradoxa GN=groL-A PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.639e-55
Identity = 107/184 (58.15%), Postives = 145/184 (78.80%), Query Frame = 3
Query:  303 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND+AGDGTTT+ VLA  ++ EG++ VAAGANP+ I RGI++ ++ +V  +   +K VEDS  +  VA++SAGN+ EVG MIA+A+ KVG++GV++LEEGKS    L + EGM+F
Sbjct:   11 ARRALEKGMDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAMVKEGMRNVAAGANPMAIKRGIDRATQKVVETIAAHAKPVEDSRAITQVASISAGNDDEVGKMIADAIEKVGKEGVISLEEGKSTTTELEITEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.639e-55
Identity = 109/195 (55.90%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++  G++ VAAGAN + + +GI+K S  LV+E+K  +  + DS  +A V  +SAGN+ EVG MIA+AM KVG++GV++LEEGKS    L V EGM+F
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVAEIKDKANPISDSNAIAQVGTISAGNDEEVGRMIADAMDKVGKEGVISLEEGKSMTTELEVTEGMRF 194          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH601_MESSB (60 kDa chaperonin 1 OS=Mesorhizobium sp. (strain BNC1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.639e-55
Identity = 111/196 (56.63%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  267 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AAKD+ F++D  A +++  GVN LAD V VTLGPKGRNVVL+  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+ A+KTND+AGDGTTT+ VLAQ ++ EG K VAAG NP+ + RG++     +V  L + +K+++ S E+A V  +SA    E+G MIAEAM KVG +GV+T+EE K+AE  L VVEGMQF
Sbjct:    2 AAKDVKFSRD--ARERMLRGVNILADAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVQEGAKAVAAGMNPMDLKRGVDLAVAEVVDYLAKAAKKIKTSEEVAQVGTISANGEKEIGQMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQF 195          
BLAST of CN185246 vs. ExPASy Swiss-Prot
Match: CH60_NATTJ (60 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groL PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.446e-55
Identity = 110/195 (56.41%), Postives = 152/195 (77.95%), Query Frame = 3
Query:  270 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQF 851
            AKD+ F +D  A  +L+ GVNKLAD + VTLGPKGRNVVL+ K+G+P+I NDGVT+A++++LED  EN+GA+LV++ A +TND+AGDGTTT+ +LAQ ++ EG+K V AGANP++I +GI+K     V EL++ +  VED E ++ VA++SA N+ EVG +IAEAM KVG+ GV+T+EE KS +  L VVEGMQF
Sbjct:    2 AKDIKFREDARA--RLEQGVNKLADTLKVTLGPKGRNVVLDKKFGSPQITNDGVTIARDIDLEDNYENMGAQLVKEVATQTNDVAGDGTTTATILAQAMVNEGIKNVTAGANPMIIRKGIQKAVDRAVEELQKNAVSVEDKESISQVASISA-NDEEVGKLIAEAMEKVGKDGVITVEESKSFKTDLNVVEGMQF 193          
The following BLAST results are available for this feature:
BLAST of CN185246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LEUMM2.021e-5559.4960 kDa chaperonin OS=Leuconostoc mesenteroides sub... [more]
CH60_DELAS2.021e-5558.1660 kDa chaperonin OS=Delftia acidovorans (strain D... [more]
CH602_PSYIN2.021e-5555.9060 kDa chaperonin 2 OS=Psychromonas ingrahamii (st... [more]
CH60_PSEPG2.639e-5557.6560 kDa chaperonin OS=Pseudomonas putida (strain GB... [more]
CH60_PORPU2.639e-5557.0760 kDa chaperonin, chloroplastic OS=Porphyra purpu... [more]
CH60_GALSU2.639e-5554.8960 kDa chaperonin, chloroplastic OS=Galdieria sulp... [more]
CH60_CYAPA2.639e-5558.1560 kDa chaperonin, cyanelle OS=Cyanophora paradoxa... [more]
CH602_SYNPW2.639e-5555.9060 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH601_MESSB2.639e-5556.6360 kDa chaperonin 1 OS=Mesorhizobium sp. (strain B... [more]
CH60_NATTJ3.446e-5556.4160 kDa chaperonin OS=Natranaerobius thermophilus (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185246 ID=CN185246; Name=CN185246; organism=Citrus sinensis; type=EST; length=851bp
CTCCTCTCTGCCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCG
CACTTTCTGCCGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCAC
TGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTG
ATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATT
TCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCG
CACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGAT
ATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTT
GGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTA
CGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTG
AGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
GCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAACAACATCTGTTGT
TCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTG
CAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTT
GTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGC
CGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGA
TTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTGGTGACCCTTGAA
GAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATT
T
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